miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29627 5' -50.2 NC_006151.1 + 9310 1.12 0.006733
Target:  5'- gGAAAAAAACACGGCACCACAGGCGGGa -3'
miRNA:   3'- -CUUUUUUUGUGCCGUGGUGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 127321 0.84 0.303262
Target:  5'- ------cGCGCGGguCCGCGGGCGGGg -3'
miRNA:   3'- cuuuuuuUGUGCCguGGUGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 71088 0.83 0.341524
Target:  5'- -------cCACGGCGCCGCGGGCGcGGg -3'
miRNA:   3'- cuuuuuuuGUGCCGUGGUGUCCGC-CC- -5'
29627 5' -50.2 NC_006151.1 + 10406 0.83 0.366105
Target:  5'- gGggGAGAGCGgGGUgacGCCGCGGGUGGGc -3'
miRNA:   3'- -CuuUUUUUGUgCCG---UGGUGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 30253 0.8 0.48574
Target:  5'- cGGGAGAGACGacgGGCGCCACAGacagcggcGCGGGg -3'
miRNA:   3'- -CUUUUUUUGUg--CCGUGGUGUC--------CGCCC- -5'
29627 5' -50.2 NC_006151.1 + 115550 0.79 0.545858
Target:  5'- ------cGCACGGCGuacucgcCCGCGGGCGGGc -3'
miRNA:   3'- cuuuuuuUGUGCCGU-------GGUGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 103668 0.79 0.546899
Target:  5'- -cGGAGAAgGCGGCGCgCGC-GGCGGGg -3'
miRNA:   3'- cuUUUUUUgUGCCGUG-GUGuCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 4083 0.79 0.546899
Target:  5'- --------aGCGGCGCCACGGuGCGGGc -3'
miRNA:   3'- cuuuuuuugUGCCGUGGUGUC-CGCCC- -5'
29627 5' -50.2 NC_006151.1 + 117787 0.79 0.567855
Target:  5'- ----cGGGCGgGGCGCCACGcccGGCGGGg -3'
miRNA:   3'- cuuuuUUUGUgCCGUGGUGU---CCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 33216 0.78 0.589007
Target:  5'- ---cGGAGCACgcggGGCGCCccgGCGGGCGGGa -3'
miRNA:   3'- cuuuUUUUGUG----CCGUGG---UGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 3353 0.78 0.599638
Target:  5'- --cGAGGGCGCGGgcCACCuCGGGCGGGc -3'
miRNA:   3'- cuuUUUUUGUGCC--GUGGuGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 96928 0.77 0.653014
Target:  5'- cGGGAcgGGC-CGGgAUCGCGGGCGGGa -3'
miRNA:   3'- -CUUUuuUUGuGCCgUGGUGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 82134 0.77 0.653014
Target:  5'- --------aGCGGC-CCGCGGGCGGGc -3'
miRNA:   3'- cuuuuuuugUGCCGuGGUGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 133146 0.77 0.663672
Target:  5'- cAGAGGGACucgGCGGCGgCGCGGGCGuGGg -3'
miRNA:   3'- cUUUUUUUG---UGCCGUgGUGUCCGC-CC- -5'
29627 5' -50.2 NC_006151.1 + 63408 0.77 0.663672
Target:  5'- -----cAGCACGGgCACggCGCAGGCGGGc -3'
miRNA:   3'- cuuuuuUUGUGCC-GUG--GUGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 77909 0.77 0.667927
Target:  5'- ---cGAGACGCGGC-CCACggccgugguggugaaGGGCGGGc -3'
miRNA:   3'- cuuuUUUUGUGCCGuGGUG---------------UCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 5226 0.77 0.67324
Target:  5'- aGGAGGAGGC-CGaGCGCCGCGcggcggcGGCGGGg -3'
miRNA:   3'- -CUUUUUUUGuGC-CGUGGUGU-------CCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 33961 0.77 0.674302
Target:  5'- gGGGcgGGACGCGGCGCC-CGcGCGGGg -3'
miRNA:   3'- -CUUuuUUUGUGCCGUGGuGUcCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 7991 0.77 0.674302
Target:  5'- -------cCGCGGUACCuCGGGCGGGc -3'
miRNA:   3'- cuuuuuuuGUGCCGUGGuGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 75380 0.76 0.684894
Target:  5'- uGAAGAAGuGCACGGCGCg--GGGCGGGu -3'
miRNA:   3'- -CUUUUUU-UGUGCCGUGgugUCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.