miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29627 5' -50.2 NC_006151.1 + 717 0.74 0.805331
Target:  5'- ------cGCACcggGGguCCGCGGGCGGGg -3'
miRNA:   3'- cuuuuuuUGUG---CCguGGUGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 2220 0.67 0.990499
Target:  5'- -------cCACGGCGCCcCcGGCGGcGg -3'
miRNA:   3'- cuuuuuuuGUGCCGUGGuGuCCGCC-C- -5'
29627 5' -50.2 NC_006151.1 + 2256 0.69 0.962596
Target:  5'- cGAAGGGGGCAaagucccaGaGCACgGCcGGCGGGg -3'
miRNA:   3'- -CUUUUUUUGUg-------C-CGUGgUGuCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 2437 0.68 0.975049
Target:  5'- gGAGAcGAAgACGG-GCCGCA-GCGGGg -3'
miRNA:   3'- -CUUUuUUUgUGCCgUGGUGUcCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 2485 0.67 0.987643
Target:  5'- ------cGCGCGGUGCCcgaAGGCGGc -3'
miRNA:   3'- cuuuuuuUGUGCCGUGGug-UCCGCCc -5'
29627 5' -50.2 NC_006151.1 + 2535 0.68 0.98217
Target:  5'- ----cGAGCGCGG-AgCGCuGGCGGGc -3'
miRNA:   3'- cuuuuUUUGUGCCgUgGUGuCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 2678 0.69 0.958524
Target:  5'- --cAGAGGCgcaGCGGCucgGCCccgggguGCAGGCGGGc -3'
miRNA:   3'- cuuUUUUUG---UGCCG---UGG-------UGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 2715 0.67 0.991717
Target:  5'- cGAAGGAGgccuccACGCgGGCGaaGCAGGcCGGGc -3'
miRNA:   3'- -CUUUUUU------UGUG-CCGUggUGUCC-GCCC- -5'
29627 5' -50.2 NC_006151.1 + 2783 0.66 0.995412
Target:  5'- -cGGAGcuCGCGGCACC-CGGGCc-- -3'
miRNA:   3'- cuUUUUuuGUGCCGUGGuGUCCGccc -5'
29627 5' -50.2 NC_006151.1 + 2807 0.67 0.990499
Target:  5'- ------cGCACGGCGCacuGGGCGGc -3'
miRNA:   3'- cuuuuuuUGUGCCGUGgugUCCGCCc -5'
29627 5' -50.2 NC_006151.1 + 3105 0.7 0.945907
Target:  5'- cGAGAGGccgccgcGGCGCGGguCC-CAGGcCGGGc -3'
miRNA:   3'- -CUUUUU-------UUGUGCCguGGuGUCC-GCCC- -5'
29627 5' -50.2 NC_006151.1 + 3139 0.66 0.995412
Target:  5'- ------cGCGgGGCGCCcucGGCGGGc -3'
miRNA:   3'- cuuuuuuUGUgCCGUGGuguCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 3256 0.74 0.795994
Target:  5'- ---cGGAGCGgGGCGCCGCGGcGCGcGGc -3'
miRNA:   3'- cuuuUUUUGUgCCGUGGUGUC-CGC-CC- -5'
29627 5' -50.2 NC_006151.1 + 3305 0.66 0.993782
Target:  5'- cGAAGGuGAGCGCcgGGCGCCAgAGuuCGGGg -3'
miRNA:   3'- -CUUUU-UUUGUG--CCGUGGUgUCc-GCCC- -5'
29627 5' -50.2 NC_006151.1 + 3353 0.78 0.599638
Target:  5'- --cGAGGGCGCGGgcCACCuCGGGCGGGc -3'
miRNA:   3'- cuuUUUUUGUGCC--GUGGuGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 3432 0.71 0.919759
Target:  5'- ---cGGGACGCGGCggaagccGCCGuCGGGCGcGGg -3'
miRNA:   3'- cuuuUUUUGUGCCG-------UGGU-GUCCGC-CC- -5'
29627 5' -50.2 NC_006151.1 + 3522 0.66 0.993782
Target:  5'- gGAGGAGGACA--GCAgCGCGGgaGCGGGg -3'
miRNA:   3'- -CUUUUUUUGUgcCGUgGUGUC--CGCCC- -5'
29627 5' -50.2 NC_006151.1 + 3944 0.68 0.98217
Target:  5'- ----cGGGCGCgGGCuCCGCGGGCccGGGc -3'
miRNA:   3'- cuuuuUUUGUG-CCGuGGUGUCCG--CCC- -5'
29627 5' -50.2 NC_006151.1 + 4015 0.73 0.844259
Target:  5'- cGAAGAGGGcCGCGGCGuagguccaggcggccUCGCGGGCGcGGg -3'
miRNA:   3'- -CUUUUUUU-GUGCCGU---------------GGUGUCCGC-CC- -5'
29627 5' -50.2 NC_006151.1 + 4083 0.79 0.546899
Target:  5'- --------aGCGGCGCCACGGuGCGGGc -3'
miRNA:   3'- cuuuuuuugUGCCGUGGUGUC-CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.