miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29628 3' -48.2 NC_006151.1 + 5644 0.72 0.93461
Target:  5'- -cGCCGAGAccggcccggcggcgGGGGAGGcugGGGAAGCGg -3'
miRNA:   3'- aaUGGCUCU--------------CUCCUCUua-UUCUUCGU- -5'
29628 3' -48.2 NC_006151.1 + 16415 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5'
29628 3' -48.2 NC_006151.1 + 29334 0.72 0.941336
Target:  5'- -cACCggcggGAGAGAGGGGGGggggagAGGggGCGg -3'
miRNA:   3'- aaUGG-----CUCUCUCCUCUUa-----UUCuuCGU- -5'
29628 3' -48.2 NC_006151.1 + 43331 0.72 0.941336
Target:  5'- -cGCCG-GAGAGGAaagagGAGAAGCGg -3'
miRNA:   3'- aaUGGCuCUCUCCUcuua-UUCUUCGU- -5'
29628 3' -48.2 NC_006151.1 + 16485 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5'
29628 3' -48.2 NC_006151.1 + 16450 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5'
29628 3' -48.2 NC_006151.1 + 16275 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5'
29628 3' -48.2 NC_006151.1 + 16380 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5'
29628 3' -48.2 NC_006151.1 + 16345 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5'
29628 3' -48.2 NC_006151.1 + 16310 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5'
29628 3' -48.2 NC_006151.1 + 6447 0.72 0.941336
Target:  5'- -gGCCGGaGGAGGAGAAgAAGAAGa- -3'
miRNA:   3'- aaUGGCUcUCUCCUCUUaUUCUUCgu -5'
29628 3' -48.2 NC_006151.1 + 16135 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5'
29628 3' -48.2 NC_006151.1 + 16205 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5'
29628 3' -48.2 NC_006151.1 + 16240 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5'
29628 3' -48.2 NC_006151.1 + 16170 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5'
29628 3' -48.2 NC_006151.1 + 29779 0.71 0.94572
Target:  5'- -gACCggggagaGAGAGAGGAGAGggagggGAGggGUg -3'
miRNA:   3'- aaUGG-------CUCUCUCCUCUUa-----UUCuuCGu -5'
29628 3' -48.2 NC_006151.1 + 5038 0.71 0.946193
Target:  5'- -gGCCGGGgaggccgcggcGGAGGAGGAggcggAGGAGGCc -3'
miRNA:   3'- aaUGGCUC-----------UCUCCUCUUa----UUCUUCGu -5'
29628 3' -48.2 NC_006151.1 + 10355 0.71 0.946193
Target:  5'- -gACgCGGGAGGGGAGGggAGGGAGgGg -3'
miRNA:   3'- aaUG-GCUCUCUCCUCUuaUUCUUCgU- -5'
29628 3' -48.2 NC_006151.1 + 18418 0.71 0.955095
Target:  5'- -cGCCGGGGGAGGAGGGccgccGGCGg -3'
miRNA:   3'- aaUGGCUCUCUCCUCUUauucuUCGU- -5'
29628 3' -48.2 NC_006151.1 + 1642 0.71 0.959147
Target:  5'- -gACCGcGGGAGGAGGAgAAGggGa- -3'
miRNA:   3'- aaUGGCuCUCUCCUCUUaUUCuuCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.