Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 16170 | 0.72 | 0.941336 |
Target: 5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3' miRNA: 3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 16205 | 0.72 | 0.941336 |
Target: 5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3' miRNA: 3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 16240 | 0.72 | 0.941336 |
Target: 5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3' miRNA: 3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 16275 | 0.72 | 0.941336 |
Target: 5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3' miRNA: 3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 16310 | 0.72 | 0.941336 |
Target: 5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3' miRNA: 3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 16345 | 0.72 | 0.941336 |
Target: 5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3' miRNA: 3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 16380 | 0.72 | 0.941336 |
Target: 5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3' miRNA: 3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 16415 | 0.72 | 0.941336 |
Target: 5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3' miRNA: 3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 16450 | 0.72 | 0.941336 |
Target: 5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3' miRNA: 3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 16485 | 0.72 | 0.941336 |
Target: 5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3' miRNA: 3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 16725 | 0.7 | 0.969777 |
Target: 5'- -aGCgGGGGGGGGGGAAggggGGGAAGgGg -3' miRNA: 3'- aaUGgCUCUCUCCUCUUa---UUCUUCgU- -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 18418 | 0.71 | 0.955095 |
Target: 5'- -cGCCGGGGGAGGAGGGccgccGGCGg -3' miRNA: 3'- aaUGGCUCUCUCCUCUUauucuUCGU- -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 22499 | 0.66 | 0.998856 |
Target: 5'- -cACCcgguGAGAGAGGGGGGgaaucgcgGGGGAGUc -3' miRNA: 3'- aaUGG----CUCUCUCCUCUUa-------UUCUUCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 22734 | 0.72 | 0.930794 |
Target: 5'- -gACCGAGAGcuGGAGGccgccgAGGGAGCGg -3' miRNA: 3'- aaUGGCUCUCu-CCUCUua----UUCUUCGU- -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 26251 | 0.68 | 0.991124 |
Target: 5'- -cACaacAGAGGGGAGGGggaGAGggGCAa -3' miRNA: 3'- aaUGgc-UCUCUCCUCUUa--UUCuuCGU- -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 27814 | 0.8 | 0.57405 |
Target: 5'- --cCCGGGGGAGGGGAGggggGAGGAGCc -3' miRNA: 3'- aauGGCUCUCUCCUCUUa---UUCUUCGu -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 29334 | 0.72 | 0.941336 |
Target: 5'- -cACCggcggGAGAGAGGGGGGggggagAGGggGCGg -3' miRNA: 3'- aaUGG-----CUCUCUCCUCUUa-----UUCuuCGU- -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 29387 | 0.74 | 0.869755 |
Target: 5'- ----gGGGAGAGGAGAG-GAGAGGCGg -3' miRNA: 3'- aauggCUCUCUCCUCUUaUUCUUCGU- -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 29446 | 0.76 | 0.768936 |
Target: 5'- -gGCgGGGAGAGGGGAcgcggAGGGAGCGg -3' miRNA: 3'- aaUGgCUCUCUCCUCUua---UUCUUCGU- -5' |
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29628 | 3' | -48.2 | NC_006151.1 | + | 29478 | 0.68 | 0.993374 |
Target: 5'- -cGCCGGGAGAGGAa---AGGgcGCGc -3' miRNA: 3'- aaUGGCUCUCUCCUcuuaUUCuuCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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