Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29629 | 3' | -43.1 | NC_006151.1 | + | 133216 | 0.71 | 0.999546 |
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Target: 5'- uGUUGAAGGCgugcgUcgCGCCGCgccaggGCa -3' miRNA: 3'- -CGAUUUUCGauaaaAuaGCGGCGa-----CG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 105017 | 0.72 | 0.999265 |
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Target: 5'- cGCggAGGAGCUGgugacgcaggcggCGCUGCUGCu -3' miRNA: 3'- -CGa-UUUUCGAUaaaaua-------GCGGCGACG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 134292 | 0.72 | 0.998891 |
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Target: 5'- cGCccacGGGCgcaAUUUUAUugcaCGCCGCUGCg -3' miRNA: 3'- -CGauu-UUCGa--UAAAAUA----GCGGCGACG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 39803 | 0.73 | 0.998334 |
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Target: 5'- cGCUGGGGGCUcgg----CGCCccGCUGCg -3' miRNA: 3'- -CGAUUUUCGAuaaaauaGCGG--CGACG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 32996 | 0.74 | 0.99423 |
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Target: 5'- gGCUGuuGGCUGUgggUUGUCGgCUGUUGg -3' miRNA: 3'- -CGAUuuUCGAUAa--AAUAGC-GGCGACg -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 42840 | 0.78 | 0.952712 |
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Target: 5'- gGgUGGGAGCcgcc--GUCGCCGCUGCa -3' miRNA: 3'- -CgAUUUUCGauaaaaUAGCGGCGACG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 86712 | 0.81 | 0.889252 |
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Target: 5'- cGCUGGGAGCUGgucgcggcgCGCCGCcGCg -3' miRNA: 3'- -CGAUUUUCGAUaaaaua---GCGGCGaCG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 118959 | 0.81 | 0.878459 |
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Target: 5'- cGCUGGAGGCgcuc--GUCGCCGCcgGCg -3' miRNA: 3'- -CGAUUUUCGauaaaaUAGCGGCGa-CG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 11129 | 1.19 | 0.014145 |
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Target: 5'- aGCUAAAAGCUAUUUUAUCGCCGCUGCg -3' miRNA: 3'- -CGAUUUUCGAUAAAAUAGCGGCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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