miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29629 3' -43.1 NC_006151.1 + 84890 0.67 0.999999
Target:  5'- cGCUGGAcuuccuGGCcAUggUGUaCGCCGCgcgcgGCg -3'
miRNA:   3'- -CGAUUU------UCGaUAaaAUA-GCGGCGa----CG- -5'
29629 3' -43.1 NC_006151.1 + 104272 0.67 0.999999
Target:  5'- gGCgc--GGCggcgggccCGCCGCUGCa -3'
miRNA:   3'- -CGauuuUCGauaaaauaGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 29414 0.68 0.999997
Target:  5'- cGCggaGAAGGCUcgg-UGUgGCCGCgggggGCg -3'
miRNA:   3'- -CGa--UUUUCGAuaaaAUAgCGGCGa----CG- -5'
29629 3' -43.1 NC_006151.1 + 17998 0.68 0.999997
Target:  5'- cGCUG--GGCgucucgUUGUCGCucuCGCUGUa -3'
miRNA:   3'- -CGAUuuUCGauaa--AAUAGCG---GCGACG- -5'
29629 3' -43.1 NC_006151.1 + 59804 0.67 0.999997
Target:  5'- --cGAAGGUggccaccUCGCCGCUGUc -3'
miRNA:   3'- cgaUUUUCGauaaaauAGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 123876 0.68 0.999995
Target:  5'- uGCUGcu-GCUGgcgc-UCGCCGCgGCc -3'
miRNA:   3'- -CGAUuuuCGAUaaaauAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 132412 0.68 0.999995
Target:  5'- aGCUGccGGAGCUugccc-UCGUCGCgGCg -3'
miRNA:   3'- -CGAU--UUUCGAuaaaauAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 44173 0.68 0.999995
Target:  5'- cCUGGGAGCaccgcggGUCGCCGUccggGCg -3'
miRNA:   3'- cGAUUUUCGauaaaa-UAGCGGCGa---CG- -5'
29629 3' -43.1 NC_006151.1 + 74426 0.68 0.999993
Target:  5'- uGCUGAAAGUgcg-----CGCCGUUGa -3'
miRNA:   3'- -CGAUUUUCGauaaaauaGCGGCGACg -5'
29629 3' -43.1 NC_006151.1 + 93439 0.68 0.999992
Target:  5'- --gGGGGGCgagcggggGUCGCCGCcGCg -3'
miRNA:   3'- cgaUUUUCGauaaaa--UAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 79624 0.69 0.999986
Target:  5'- ---cGGAGCgccgccGUCGCCGCUGg -3'
miRNA:   3'- cgauUUUCGauaaaaUAGCGGCGACg -5'
29629 3' -43.1 NC_006151.1 + 130331 0.69 0.99998
Target:  5'- cGCUcgGGGAGCUcgcg---CGCCGCgGCg -3'
miRNA:   3'- -CGA--UUUUCGAuaaaauaGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 103985 0.69 0.999973
Target:  5'- aGCUGGAGGCggccgUGgcggccguggaggcgCGCCGCgcgGCg -3'
miRNA:   3'- -CGAUUUUCGauaaaAUa--------------GCGGCGa--CG- -5'
29629 3' -43.1 NC_006151.1 + 10009 0.69 0.999973
Target:  5'- --cGAGAGCggcggcggcgGUCGCCGCgGCc -3'
miRNA:   3'- cgaUUUUCGauaaaa----UAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 56366 0.7 0.999905
Target:  5'- cGC-GGAAGCUAcgg---CGCCuGCUGCa -3'
miRNA:   3'- -CGaUUUUCGAUaaaauaGCGG-CGACG- -5'
29629 3' -43.1 NC_006151.1 + 99203 0.7 0.999874
Target:  5'- gGCgugugGGAGGCgg---UGcaggccagcgccUCGCCGCUGCa -3'
miRNA:   3'- -CGa----UUUUCGauaaaAU------------AGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 121935 0.7 0.99986
Target:  5'- uGCUGGGGGCgcuggc--CGCCGCcgGCg -3'
miRNA:   3'- -CGAUUUUCGauaaaauaGCGGCGa-CG- -5'
29629 3' -43.1 NC_006151.1 + 39956 0.71 0.999722
Target:  5'- uGCUGAccccGGGCgcc---GUCGCCGCcGCg -3'
miRNA:   3'- -CGAUU----UUCGauaaaaUAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 46951 0.71 0.999722
Target:  5'- cGCggacuGGGGCgacccUGUUGCUGCUGCg -3'
miRNA:   3'- -CGau---UUUCGauaaaAUAGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 121857 0.71 0.999652
Target:  5'- cGCUGGAGGCgcagacgaCGCCGCUcacguGCg -3'
miRNA:   3'- -CGAUUUUCGauaaaauaGCGGCGA-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.