Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29629 | 3' | -43.1 | NC_006151.1 | + | 74426 | 0.68 | 0.999993 |
Target: 5'- uGCUGAAAGUgcg-----CGCCGUUGa -3' miRNA: 3'- -CGAUUUUCGauaaaauaGCGGCGACg -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 44173 | 0.68 | 0.999995 |
Target: 5'- cCUGGGAGCaccgcggGUCGCCGUccggGCg -3' miRNA: 3'- cGAUUUUCGauaaaa-UAGCGGCGa---CG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 132412 | 0.68 | 0.999995 |
Target: 5'- aGCUGccGGAGCUugccc-UCGUCGCgGCg -3' miRNA: 3'- -CGAU--UUUCGAuaaaauAGCGGCGaCG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 123876 | 0.68 | 0.999995 |
Target: 5'- uGCUGcu-GCUGgcgc-UCGCCGCgGCc -3' miRNA: 3'- -CGAUuuuCGAUaaaauAGCGGCGaCG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 17998 | 0.68 | 0.999997 |
Target: 5'- cGCUG--GGCgucucgUUGUCGCucuCGCUGUa -3' miRNA: 3'- -CGAUuuUCGauaa--AAUAGCG---GCGACG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 29414 | 0.68 | 0.999997 |
Target: 5'- cGCggaGAAGGCUcgg-UGUgGCCGCgggggGCg -3' miRNA: 3'- -CGa--UUUUCGAuaaaAUAgCGGCGa----CG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 59804 | 0.67 | 0.999997 |
Target: 5'- --cGAAGGUggccaccUCGCCGCUGUc -3' miRNA: 3'- cgaUUUUCGauaaaauAGCGGCGACG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 109644 | 0.67 | 0.999999 |
Target: 5'- gGCgagAGGAGC--------CGCCGCUGCc -3' miRNA: 3'- -CGa--UUUUCGauaaaauaGCGGCGACG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 136970 | 0.67 | 0.999999 |
Target: 5'- uGCU-GGAGCUGgc----CGCCGCgccggGCg -3' miRNA: 3'- -CGAuUUUCGAUaaaauaGCGGCGa----CG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 109182 | 0.67 | 0.999999 |
Target: 5'- aGCUGGAGGgaGUcgUcgUGCCuCUGCc -3' miRNA: 3'- -CGAUUUUCgaUAaaAuaGCGGcGACG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 77828 | 0.67 | 0.999999 |
Target: 5'- uCUccGAGCUGccca---GCCGCUGCa -3' miRNA: 3'- cGAuuUUCGAUaaaauagCGGCGACG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 84890 | 0.67 | 0.999999 |
Target: 5'- cGCUGGAcuuccuGGCcAUggUGUaCGCCGCgcgcgGCg -3' miRNA: 3'- -CGAUUU------UCGaUAaaAUA-GCGGCGa----CG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 85331 | 0.67 | 0.999999 |
Target: 5'- cGCUGGAgggccacAGCg---UgcUCGCCGCgcugGCg -3' miRNA: 3'- -CGAUUU-------UCGauaaAauAGCGGCGa---CG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 104272 | 0.67 | 0.999999 |
Target: 5'- gGCgc--GGCggcgggccCGCCGCUGCa -3' miRNA: 3'- -CGauuuUCGauaaaauaGCGGCGACG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 97447 | 0.67 | 0.999999 |
Target: 5'- aGCUGAGGGC------GUCGCCGa-GCu -3' miRNA: 3'- -CGAUUUUCGauaaaaUAGCGGCgaCG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 100624 | 0.67 | 0.999999 |
Target: 5'- cGCUGGGAcCUGgucag-CGCCGCgcUGCg -3' miRNA: 3'- -CGAUUUUcGAUaaaauaGCGGCG--ACG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 17450 | 0.66 | 1 |
Target: 5'- --gAGGAGCgcagcaccacgUGUUGCCGCgGCg -3' miRNA: 3'- cgaUUUUCGauaaa------AUAGCGGCGaCG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 112598 | 0.66 | 1 |
Target: 5'- -gUGGAGGCcgccgcggCGCCGCUGg -3' miRNA: 3'- cgAUUUUCGauaaaauaGCGGCGACg -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 85485 | 0.66 | 1 |
Target: 5'- -----cGGCgaggacg-CGCCGCUGCu -3' miRNA: 3'- cgauuuUCGauaaaauaGCGGCGACG- -5' |
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29629 | 3' | -43.1 | NC_006151.1 | + | 5880 | 0.66 | 1 |
Target: 5'- cGCcGGGGGCcccggccUCuGCCGCUGCg -3' miRNA: 3'- -CGaUUUUCGauaaaauAG-CGGCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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