miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29629 3' -43.1 NC_006151.1 + 11129 1.19 0.014145
Target:  5'- aGCUAAAAGCUAUUUUAUCGCCGCUGCg -3'
miRNA:   3'- -CGAUUUUCGAUAAAAUAGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 118959 0.81 0.878459
Target:  5'- cGCUGGAGGCgcuc--GUCGCCGCcgGCg -3'
miRNA:   3'- -CGAUUUUCGauaaaaUAGCGGCGa-CG- -5'
29629 3' -43.1 NC_006151.1 + 86712 0.81 0.889252
Target:  5'- cGCUGGGAGCUGgucgcggcgCGCCGCcGCg -3'
miRNA:   3'- -CGAUUUUCGAUaaaaua---GCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 42840 0.78 0.952712
Target:  5'- gGgUGGGAGCcgcc--GUCGCCGCUGCa -3'
miRNA:   3'- -CgAUUUUCGauaaaaUAGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 32996 0.74 0.99423
Target:  5'- gGCUGuuGGCUGUgggUUGUCGgCUGUUGg -3'
miRNA:   3'- -CGAUuuUCGAUAa--AAUAGC-GGCGACg -5'
29629 3' -43.1 NC_006151.1 + 39803 0.73 0.998334
Target:  5'- cGCUGGGGGCUcgg----CGCCccGCUGCg -3'
miRNA:   3'- -CGAUUUUCGAuaaaauaGCGG--CGACG- -5'
29629 3' -43.1 NC_006151.1 + 134292 0.72 0.998891
Target:  5'- cGCccacGGGCgcaAUUUUAUugcaCGCCGCUGCg -3'
miRNA:   3'- -CGauu-UUCGa--UAAAAUA----GCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 105017 0.72 0.999265
Target:  5'- cGCggAGGAGCUGgugacgcaggcggCGCUGCUGCu -3'
miRNA:   3'- -CGa-UUUUCGAUaaaaua-------GCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 133216 0.71 0.999546
Target:  5'- uGUUGAAGGCgugcgUcgCGCCGCgccaggGCa -3'
miRNA:   3'- -CGAUUUUCGauaaaAuaGCGGCGa-----CG- -5'
29629 3' -43.1 NC_006151.1 + 121857 0.71 0.999652
Target:  5'- cGCUGGAGGCgcagacgaCGCCGCUcacguGCg -3'
miRNA:   3'- -CGAUUUUCGauaaaauaGCGGCGA-----CG- -5'
29629 3' -43.1 NC_006151.1 + 46951 0.71 0.999722
Target:  5'- cGCggacuGGGGCgacccUGUUGCUGCUGCg -3'
miRNA:   3'- -CGau---UUUCGauaaaAUAGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 39956 0.71 0.999722
Target:  5'- uGCUGAccccGGGCgcc---GUCGCCGCcGCg -3'
miRNA:   3'- -CGAUU----UUCGauaaaaUAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 121935 0.7 0.99986
Target:  5'- uGCUGGGGGCgcuggc--CGCCGCcgGCg -3'
miRNA:   3'- -CGAUUUUCGauaaaauaGCGGCGa-CG- -5'
29629 3' -43.1 NC_006151.1 + 99203 0.7 0.999874
Target:  5'- gGCgugugGGAGGCgg---UGcaggccagcgccUCGCCGCUGCa -3'
miRNA:   3'- -CGa----UUUUCGauaaaAU------------AGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 56366 0.7 0.999905
Target:  5'- cGC-GGAAGCUAcgg---CGCCuGCUGCa -3'
miRNA:   3'- -CGaUUUUCGAUaaaauaGCGG-CGACG- -5'
29629 3' -43.1 NC_006151.1 + 103985 0.69 0.999973
Target:  5'- aGCUGGAGGCggccgUGgcggccguggaggcgCGCCGCgcgGCg -3'
miRNA:   3'- -CGAUUUUCGauaaaAUa--------------GCGGCGa--CG- -5'
29629 3' -43.1 NC_006151.1 + 10009 0.69 0.999973
Target:  5'- --cGAGAGCggcggcggcgGUCGCCGCgGCc -3'
miRNA:   3'- cgaUUUUCGauaaaa----UAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 130331 0.69 0.99998
Target:  5'- cGCUcgGGGAGCUcgcg---CGCCGCgGCg -3'
miRNA:   3'- -CGA--UUUUCGAuaaaauaGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 79624 0.69 0.999986
Target:  5'- ---cGGAGCgccgccGUCGCCGCUGg -3'
miRNA:   3'- cgauUUUCGauaaaaUAGCGGCGACg -5'
29629 3' -43.1 NC_006151.1 + 93439 0.68 0.999992
Target:  5'- --gGGGGGCgagcggggGUCGCCGCcGCg -3'
miRNA:   3'- cgaUUUUCGauaaaa--UAGCGGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.