miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29629 3' -43.1 NC_006151.1 + 5713 0.66 1
Target:  5'- cGCUGcuGGCUGUgcUGguggCGCCGggGUc -3'
miRNA:   3'- -CGAUuuUCGAUAaaAUa---GCGGCgaCG- -5'
29629 3' -43.1 NC_006151.1 + 5880 0.66 1
Target:  5'- cGCcGGGGGCcccggccUCuGCCGCUGCg -3'
miRNA:   3'- -CGaUUUUCGauaaaauAG-CGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 10009 0.69 0.999973
Target:  5'- --cGAGAGCggcggcggcgGUCGCCGCgGCc -3'
miRNA:   3'- cgaUUUUCGauaaaa----UAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 11129 1.19 0.014145
Target:  5'- aGCUAAAAGCUAUUUUAUCGCCGCUGCg -3'
miRNA:   3'- -CGAUUUUCGAUAAAAUAGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 17450 0.66 1
Target:  5'- --gAGGAGCgcagcaccacgUGUUGCCGCgGCg -3'
miRNA:   3'- cgaUUUUCGauaaa------AUAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 17998 0.68 0.999997
Target:  5'- cGCUG--GGCgucucgUUGUCGCucuCGCUGUa -3'
miRNA:   3'- -CGAUuuUCGauaa--AAUAGCG---GCGACG- -5'
29629 3' -43.1 NC_006151.1 + 20122 0.66 1
Target:  5'- gGCgacGGGGCUGgggggcgggCGCCGCggggGCg -3'
miRNA:   3'- -CGau-UUUCGAUaaaaua---GCGGCGa---CG- -5'
29629 3' -43.1 NC_006151.1 + 29414 0.68 0.999997
Target:  5'- cGCggaGAAGGCUcgg-UGUgGCCGCgggggGCg -3'
miRNA:   3'- -CGa--UUUUCGAuaaaAUAgCGGCGa----CG- -5'
29629 3' -43.1 NC_006151.1 + 31004 0.66 1
Target:  5'- aGgaGGGAGgaAggggGUCGCCGCcGCg -3'
miRNA:   3'- -CgaUUUUCgaUaaaaUAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 32996 0.74 0.99423
Target:  5'- gGCUGuuGGCUGUgggUUGUCGgCUGUUGg -3'
miRNA:   3'- -CGAUuuUCGAUAa--AAUAGC-GGCGACg -5'
29629 3' -43.1 NC_006151.1 + 39803 0.73 0.998334
Target:  5'- cGCUGGGGGCUcgg----CGCCccGCUGCg -3'
miRNA:   3'- -CGAUUUUCGAuaaaauaGCGG--CGACG- -5'
29629 3' -43.1 NC_006151.1 + 39956 0.71 0.999722
Target:  5'- uGCUGAccccGGGCgcc---GUCGCCGCcGCg -3'
miRNA:   3'- -CGAUU----UUCGauaaaaUAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 42840 0.78 0.952712
Target:  5'- gGgUGGGAGCcgcc--GUCGCCGCUGCa -3'
miRNA:   3'- -CgAUUUUCGauaaaaUAGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 44173 0.68 0.999995
Target:  5'- cCUGGGAGCaccgcggGUCGCCGUccggGCg -3'
miRNA:   3'- cGAUUUUCGauaaaa-UAGCGGCGa---CG- -5'
29629 3' -43.1 NC_006151.1 + 46951 0.71 0.999722
Target:  5'- cGCggacuGGGGCgacccUGUUGCUGCUGCg -3'
miRNA:   3'- -CGau---UUUCGauaaaAUAGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 47521 0.66 1
Target:  5'- cGCUAAuuGCaGUaacg-CGCgGCUGCc -3'
miRNA:   3'- -CGAUUuuCGaUAaaauaGCGgCGACG- -5'
29629 3' -43.1 NC_006151.1 + 56366 0.7 0.999905
Target:  5'- cGC-GGAAGCUAcgg---CGCCuGCUGCa -3'
miRNA:   3'- -CGaUUUUCGAUaaaauaGCGG-CGACG- -5'
29629 3' -43.1 NC_006151.1 + 59804 0.67 0.999997
Target:  5'- --cGAAGGUggccaccUCGCCGCUGUc -3'
miRNA:   3'- cgaUUUUCGauaaaauAGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 74426 0.68 0.999993
Target:  5'- uGCUGAAAGUgcg-----CGCCGUUGa -3'
miRNA:   3'- -CGAUUUUCGauaaaauaGCGGCGACg -5'
29629 3' -43.1 NC_006151.1 + 77828 0.67 0.999999
Target:  5'- uCUccGAGCUGccca---GCCGCUGCa -3'
miRNA:   3'- cGAuuUUCGAUaaaauagCGGCGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.