miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29629 3' -43.1 NC_006151.1 + 136970 0.67 0.999999
Target:  5'- uGCU-GGAGCUGgc----CGCCGCgccggGCg -3'
miRNA:   3'- -CGAuUUUCGAUaaaauaGCGGCGa----CG- -5'
29629 3' -43.1 NC_006151.1 + 134292 0.72 0.998891
Target:  5'- cGCccacGGGCgcaAUUUUAUugcaCGCCGCUGCg -3'
miRNA:   3'- -CGauu-UUCGa--UAAAAUA----GCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 133216 0.71 0.999546
Target:  5'- uGUUGAAGGCgugcgUcgCGCCGCgccaggGCa -3'
miRNA:   3'- -CGAUUUUCGauaaaAuaGCGGCGa-----CG- -5'
29629 3' -43.1 NC_006151.1 + 132412 0.68 0.999995
Target:  5'- aGCUGccGGAGCUugccc-UCGUCGCgGCg -3'
miRNA:   3'- -CGAU--UUUCGAuaaaauAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 130331 0.69 0.99998
Target:  5'- cGCUcgGGGAGCUcgcg---CGCCGCgGCg -3'
miRNA:   3'- -CGA--UUUUCGAuaaaauaGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 123876 0.68 0.999995
Target:  5'- uGCUGcu-GCUGgcgc-UCGCCGCgGCc -3'
miRNA:   3'- -CGAUuuuCGAUaaaauAGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 121935 0.7 0.99986
Target:  5'- uGCUGGGGGCgcuggc--CGCCGCcgGCg -3'
miRNA:   3'- -CGAUUUUCGauaaaauaGCGGCGa-CG- -5'
29629 3' -43.1 NC_006151.1 + 121857 0.71 0.999652
Target:  5'- cGCUGGAGGCgcagacgaCGCCGCUcacguGCg -3'
miRNA:   3'- -CGAUUUUCGauaaaauaGCGGCGA-----CG- -5'
29629 3' -43.1 NC_006151.1 + 118959 0.81 0.878459
Target:  5'- cGCUGGAGGCgcuc--GUCGCCGCcgGCg -3'
miRNA:   3'- -CGAUUUUCGauaaaaUAGCGGCGa-CG- -5'
29629 3' -43.1 NC_006151.1 + 112598 0.66 1
Target:  5'- -gUGGAGGCcgccgcggCGCCGCUGg -3'
miRNA:   3'- cgAUUUUCGauaaaauaGCGGCGACg -5'
29629 3' -43.1 NC_006151.1 + 109644 0.67 0.999999
Target:  5'- gGCgagAGGAGC--------CGCCGCUGCc -3'
miRNA:   3'- -CGa--UUUUCGauaaaauaGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 109182 0.67 0.999999
Target:  5'- aGCUGGAGGgaGUcgUcgUGCCuCUGCc -3'
miRNA:   3'- -CGAUUUUCgaUAaaAuaGCGGcGACG- -5'
29629 3' -43.1 NC_006151.1 + 107582 0.66 1
Target:  5'- aGCUGAcucccgccgccAAGCUGgccccgccggCGCCGCcGCc -3'
miRNA:   3'- -CGAUU-----------UUCGAUaaaaua----GCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 106362 0.66 1
Target:  5'- cGCUGGAcgcgGGCgcgcgcc-CGCCGCgGCg -3'
miRNA:   3'- -CGAUUU----UCGauaaaauaGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 105017 0.72 0.999265
Target:  5'- cGCggAGGAGCUGgugacgcaggcggCGCUGCUGCu -3'
miRNA:   3'- -CGa-UUUUCGAUaaaaua-------GCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 104867 0.66 1
Target:  5'- gGCgacGGAGCgcgccacgCGCCuGCUGCg -3'
miRNA:   3'- -CGau-UUUCGauaaaauaGCGG-CGACG- -5'
29629 3' -43.1 NC_006151.1 + 104272 0.67 0.999999
Target:  5'- gGCgc--GGCggcgggccCGCCGCUGCa -3'
miRNA:   3'- -CGauuuUCGauaaaauaGCGGCGACG- -5'
29629 3' -43.1 NC_006151.1 + 103985 0.69 0.999973
Target:  5'- aGCUGGAGGCggccgUGgcggccguggaggcgCGCCGCgcgGCg -3'
miRNA:   3'- -CGAUUUUCGauaaaAUa--------------GCGGCGa--CG- -5'
29629 3' -43.1 NC_006151.1 + 100886 0.66 1
Target:  5'- cCUGGAGGUgcug----CGCCGCgGCg -3'
miRNA:   3'- cGAUUUUCGauaaaauaGCGGCGaCG- -5'
29629 3' -43.1 NC_006151.1 + 100624 0.67 0.999999
Target:  5'- cGCUGGGAcCUGgucag-CGCCGCgcUGCg -3'
miRNA:   3'- -CGAUUUUcGAUaaaauaGCGGCG--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.