miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29629 5' -57.4 NC_006151.1 + 61870 0.75 0.33303
Target:  5'- cGGCGCGucuGCGCCUGGACccuccagGCCGUggugCUg -3'
miRNA:   3'- aCCGCGC---CGCGGAUCUG-------UGGCAaa--GA- -5'
29629 5' -57.4 NC_006151.1 + 62094 0.79 0.213049
Target:  5'- cGGCGCGGUcgGCCUGGGCgcgGCCGUggUCg -3'
miRNA:   3'- aCCGCGCCG--CGGAUCUG---UGGCAa-AGa -5'
29629 5' -57.4 NC_006151.1 + 63756 0.67 0.776532
Target:  5'- cGGCGgGGCGuCCUcGGCGCCcccgcgUCg -3'
miRNA:   3'- aCCGCgCCGC-GGAuCUGUGGcaa---AGa -5'
29629 5' -57.4 NC_006151.1 + 64008 0.76 0.297754
Target:  5'- cGGUGCGGCGCC-AGGCGCCcgaUCg -3'
miRNA:   3'- aCCGCGCCGCGGaUCUGUGGcaaAGa -5'
29629 5' -57.4 NC_006151.1 + 64638 0.67 0.785768
Target:  5'- gGGCGCGGCGCCccgcgcAGGaACCGc---- -3'
miRNA:   3'- aCCGCGCCGCGGa-----UCUgUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 66881 0.68 0.698776
Target:  5'- gGGCGCGcccggccccGCGCCggaGGACGCCGc---- -3'
miRNA:   3'- aCCGCGC---------CGCGGa--UCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 67729 0.7 0.617418
Target:  5'- cGGCGCGGCGCacAGGCACgGc---- -3'
miRNA:   3'- aCCGCGCCGCGgaUCUGUGgCaaaga -5'
29629 5' -57.4 NC_006151.1 + 68273 0.72 0.478608
Target:  5'- cGGuCGCGGCGCC-GGGCGCCa----- -3'
miRNA:   3'- aCC-GCGCCGCGGaUCUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 69141 0.66 0.829709
Target:  5'- gGGCGCgcgGGUGCUc-GACGCCGUgccgCUc -3'
miRNA:   3'- aCCGCG---CCGCGGauCUGUGGCAaa--GA- -5'
29629 5' -57.4 NC_006151.1 + 71091 0.7 0.586869
Target:  5'- cGGCGCcgcgGGCGC--GGGCGCCGUgcgCUa -3'
miRNA:   3'- aCCGCG----CCGCGgaUCUGUGGCAaa-GA- -5'
29629 5' -57.4 NC_006151.1 + 71229 0.66 0.821248
Target:  5'- gGGCGCGcGCGCC--GACcCCGUc--- -3'
miRNA:   3'- aCCGCGC-CGCGGauCUGuGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 75223 0.66 0.853991
Target:  5'- gGGCGCGcGUcgGCCacgUAGGCGCCGa---- -3'
miRNA:   3'- aCCGCGC-CG--CGG---AUCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 76092 0.67 0.767168
Target:  5'- aGGgGCGGCGCCUucuccaucaGGACGCgcaGcaUCUg -3'
miRNA:   3'- aCCgCGCCGCGGA---------UCUGUGg--CaaAGA- -5'
29629 5' -57.4 NC_006151.1 + 77681 0.66 0.837992
Target:  5'- cGGCGuCGGCGCuCUcgcuGACGCuCGUg--- -3'
miRNA:   3'- aCCGC-GCCGCG-GAu---CUGUG-GCAaaga -5'
29629 5' -57.4 NC_006151.1 + 78136 0.67 0.803817
Target:  5'- gGGcCGCgGGCGCCUcGGACgacgccucggccGCCGUggUCg -3'
miRNA:   3'- aCC-GCG-CCGCGGA-UCUG------------UGGCAa-AGa -5'
29629 5' -57.4 NC_006151.1 + 83625 0.66 0.837992
Target:  5'- cGGCGUcgcgaaGGCgGCCUGGugcuGCGCCGUg--- -3'
miRNA:   3'- aCCGCG------CCG-CGGAUC----UGUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 83812 0.68 0.717741
Target:  5'- gUGGUGCucuugccGGUGCCgAGGCGCCGUc--- -3'
miRNA:   3'- -ACCGCG-------CCGCGGaUCUGUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 84623 0.66 0.846088
Target:  5'- -cGCGCGGcCGCCgcGGCGCUGg---- -3'
miRNA:   3'- acCGCGCC-GCGGauCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 84661 0.67 0.767168
Target:  5'- gGGCGC-GCGCCUcGAgGCCGa---- -3'
miRNA:   3'- aCCGCGcCGCGGAuCUgUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 84783 0.66 0.821248
Target:  5'- cGGCGCGcGcCGCCgaggAGGCGCCc----- -3'
miRNA:   3'- aCCGCGC-C-GCGGa---UCUGUGGcaaaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.