miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29629 5' -57.4 NC_006151.1 + 20461 0.66 0.852426
Target:  5'- gGGgGUGGCGCCggucccccggggGGGCGCgGgggUCg -3'
miRNA:   3'- aCCgCGCCGCGGa-----------UCUGUGgCaa-AGa -5'
29629 5' -57.4 NC_006151.1 + 21414 0.68 0.708787
Target:  5'- cGGUGCGGCGUCUcGGGCcUCGggggUCg -3'
miRNA:   3'- aCCGCGCCGCGGA-UCUGuGGCaa--AGa -5'
29629 5' -57.4 NC_006151.1 + 21974 0.69 0.668446
Target:  5'- gUGGUGCGGCGCCggcaGCGCCcaaagaUCUg -3'
miRNA:   3'- -ACCGCGCCGCGGauc-UGUGGcaa---AGA- -5'
29629 5' -57.4 NC_006151.1 + 27086 0.76 0.297754
Target:  5'- gGGCGCGGCGCa-GGGCGCgCGUgUCg -3'
miRNA:   3'- aCCGCGCCGCGgaUCUGUG-GCAaAGa -5'
29629 5' -57.4 NC_006151.1 + 33303 0.66 0.837992
Target:  5'- gGGCGCGcGCGCgUGGG-ACCGg---- -3'
miRNA:   3'- aCCGCGC-CGCGgAUCUgUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 33966 0.72 0.507297
Target:  5'- gGGaCGCGGCGCCcgcgcggGGACACUcUUUCc -3'
miRNA:   3'- aCC-GCGCCGCGGa------UCUGUGGcAAAGa -5'
29629 5' -57.4 NC_006151.1 + 36908 0.69 0.68871
Target:  5'- cGGCGCcGCGCCggagAGGCGCCc----- -3'
miRNA:   3'- aCCGCGcCGCGGa---UCUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 39294 0.66 0.821248
Target:  5'- cGGCGCGGgaccucggcuuCGCC--GGCGCCGUg--- -3'
miRNA:   3'- aCCGCGCC-----------GCGGauCUGUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 39351 0.78 0.240645
Target:  5'- cGGCGCGGCGCCggcucaucgugcUGGACACCa----- -3'
miRNA:   3'- aCCGCGCCGCGG------------AUCUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 49253 0.67 0.776532
Target:  5'- gGGCGCGGCuCgUGcGCGCCGUcgUCc -3'
miRNA:   3'- aCCGCGCCGcGgAUcUGUGGCAa-AGa -5'
29629 5' -57.4 NC_006151.1 + 50027 0.66 0.837992
Target:  5'- -cGCGCGGCGCCcccGGGCGCgGc---- -3'
miRNA:   3'- acCGCGCCGCGGa--UCUGUGgCaaaga -5'
29629 5' -57.4 NC_006151.1 + 50436 0.72 0.49765
Target:  5'- cUGcGCGcCGGCgGCCUGGGCACCGc---- -3'
miRNA:   3'- -AC-CGC-GCCG-CGGAUCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 52463 0.67 0.767168
Target:  5'- cGGCGgccaGGCGCCggUAGGcCGCCGUg--- -3'
miRNA:   3'- aCCGCg---CCGCGG--AUCU-GUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 52855 0.68 0.712774
Target:  5'- aGGUGCGGCugcugcgugGCCUcgcgguaccggucgaAGGCGCCGUgcgCa -3'
miRNA:   3'- aCCGCGCCG---------CGGA---------------UCUGUGGCAaa-Ga -5'
29629 5' -57.4 NC_006151.1 + 53971 0.67 0.803817
Target:  5'- cGGCgGCGGCGCCUccgcGGGCGUCGcggCg -3'
miRNA:   3'- aCCG-CGCCGCGGA----UCUGUGGCaaaGa -5'
29629 5' -57.4 NC_006151.1 + 54425 0.73 0.459932
Target:  5'- cUGGCGCGGCGCUUcggcgacgAGGCGCCc----- -3'
miRNA:   3'- -ACCGCGCCGCGGA--------UCUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 55394 0.69 0.675556
Target:  5'- aGGUGCGGCGCCUGcGcgagcaggcccugcGCGCCGc---- -3'
miRNA:   3'- aCCGCGCCGCGGAU-C--------------UGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 57614 0.66 0.829709
Target:  5'- cGGcCGCGGcCGCCUcgacggcgcgcgAGACcCCGUUg-- -3'
miRNA:   3'- aCC-GCGCC-GCGGA------------UCUGuGGCAAaga -5'
29629 5' -57.4 NC_006151.1 + 58348 0.66 0.846088
Target:  5'- aGGCGCGcGCGaagCUGGucCGCCGcgUCg -3'
miRNA:   3'- aCCGCGC-CGCg--GAUCu-GUGGCaaAGa -5'
29629 5' -57.4 NC_006151.1 + 58660 0.7 0.607214
Target:  5'- gGGCGCGGCGCagGGccgccaugaccGCGCCGUgcgCg -3'
miRNA:   3'- aCCGCGCCGCGgaUC-----------UGUGGCAaa-Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.