miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29629 5' -57.4 NC_006151.1 + 50436 0.72 0.49765
Target:  5'- cUGcGCGcCGGCgGCCUGGGCACCGc---- -3'
miRNA:   3'- -AC-CGC-GCCG-CGGAUCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 33966 0.72 0.507297
Target:  5'- gGGaCGCGGCGCCcgcgcggGGACACUcUUUCc -3'
miRNA:   3'- aCC-GCGCCGCGGa------UCUGUGGcAAAGa -5'
29629 5' -57.4 NC_006151.1 + 123053 0.71 0.526823
Target:  5'- cGGcCGCGGCGCUgcgcGACGCCGa---- -3'
miRNA:   3'- aCC-GCGCCGCGGau--CUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 95127 0.71 0.546624
Target:  5'- cGGCGUugaGGCGCCgcGcCGCCGggUCg -3'
miRNA:   3'- aCCGCG---CCGCGGauCuGUGGCaaAGa -5'
29629 5' -57.4 NC_006151.1 + 118221 0.71 0.546624
Target:  5'- gUGGCG-GGCGCCcGGAcCACCGggcUCg -3'
miRNA:   3'- -ACCGCgCCGCGGaUCU-GUGGCaa-AGa -5'
29629 5' -57.4 NC_006151.1 + 100091 0.71 0.546624
Target:  5'- aGGCGcCGGCGCC--GGCGCCGcccUCg -3'
miRNA:   3'- aCCGC-GCCGCGGauCUGUGGCaa-AGa -5'
29629 5' -57.4 NC_006151.1 + 118131 0.71 0.546624
Target:  5'- gUGGCGCGcaGCGCCgacGACGCCGcggCg -3'
miRNA:   3'- -ACCGCGC--CGCGGau-CUGUGGCaaaGa -5'
29629 5' -57.4 NC_006151.1 + 103485 0.71 0.546624
Target:  5'- cGGCGCuguGGCGCCUGGugGCgCGc---- -3'
miRNA:   3'- aCCGCG---CCGCGGAUCugUG-GCaaaga -5'
29629 5' -57.4 NC_006151.1 + 99559 0.71 0.546624
Target:  5'- gGGCGCGGCGCgCgcGGCGCUGcugCg -3'
miRNA:   3'- aCCGCGCCGCG-GauCUGUGGCaaaGa -5'
29629 5' -57.4 NC_006151.1 + 18704 0.71 0.556613
Target:  5'- cGGCGcCGGCGUCguGACGCCGUc--- -3'
miRNA:   3'- aCCGC-GCCGCGGauCUGUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 131132 0.71 0.565649
Target:  5'- aGGcCGCGGCGCCgcGGCcgucauaGCCGUcgUCg -3'
miRNA:   3'- aCC-GCGCCGCGGauCUG-------UGGCAa-AGa -5'
29629 5' -57.4 NC_006151.1 + 86504 0.71 0.576742
Target:  5'- cGG-GCGGCGCgUGGGCACCa----- -3'
miRNA:   3'- aCCgCGCCGCGgAUCUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 71091 0.7 0.586869
Target:  5'- cGGCGCcgcgGGCGC--GGGCGCCGUgcgCUa -3'
miRNA:   3'- aCCGCG----CCGCGgaUCUGUGGCAaa-GA- -5'
29629 5' -57.4 NC_006151.1 + 116113 0.7 0.607214
Target:  5'- aUGGCGCGGCGCUUgucGGGCAgCa----- -3'
miRNA:   3'- -ACCGCGCCGCGGA---UCUGUgGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 58660 0.7 0.607214
Target:  5'- gGGCGCGGCGCagGGccgccaugaccGCGCCGUgcgCg -3'
miRNA:   3'- aCCGCGCCGCGgaUC-----------UGUGGCAaa-Ga -5'
29629 5' -57.4 NC_006151.1 + 128022 0.7 0.607214
Target:  5'- cGGCGaCGGCGUCUGcGACGCCc----- -3'
miRNA:   3'- aCCGC-GCCGCGGAU-CUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 3697 0.7 0.611294
Target:  5'- gGcGCGCGGCGCUUcuucuugcgccgcucGGGCGCUGggUCc -3'
miRNA:   3'- aC-CGCGCCGCGGA---------------UCUGUGGCaaAGa -5'
29629 5' -57.4 NC_006151.1 + 92141 0.7 0.616397
Target:  5'- cGcGCGCGGCGCCaAGGCcaucauggccgcgGCCGUgcgCg -3'
miRNA:   3'- aC-CGCGCCGCGGaUCUG-------------UGGCAaa-Ga -5'
29629 5' -57.4 NC_006151.1 + 67729 0.7 0.617418
Target:  5'- cGGCGCGGCGCacAGGCACgGc---- -3'
miRNA:   3'- aCCGCGCCGCGgaUCUGUGgCaaaga -5'
29629 5' -57.4 NC_006151.1 + 85166 0.7 0.627633
Target:  5'- gGGC-CGGCGCCgcGGGCGCCGc---- -3'
miRNA:   3'- aCCGcGCCGCGGa-UCUGUGGCaaaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.