miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29629 5' -57.4 NC_006151.1 + 11164 1.08 0.002251
Target:  5'- cUGGCGCGGCGCCUAGACACCGUUUCUg -3'
miRNA:   3'- -ACCGCGCCGCGGAUCUGUGGCAAAGA- -5'
29629 5' -57.4 NC_006151.1 + 62094 0.79 0.213049
Target:  5'- cGGCGCGGUcgGCCUGGGCgcgGCCGUggUCg -3'
miRNA:   3'- aCCGCGCCG--CGGAUCUG---UGGCAa-AGa -5'
29629 5' -57.4 NC_006151.1 + 5361 0.78 0.218341
Target:  5'- cGGCGCGGCGCCggcGGgGCUGUcUCUg -3'
miRNA:   3'- aCCGCGCCGCGGau-CUgUGGCAaAGA- -5'
29629 5' -57.4 NC_006151.1 + 39351 0.78 0.240645
Target:  5'- cGGCGCGGCGCCggcucaucgugcUGGACACCa----- -3'
miRNA:   3'- aCCGCGCCGCGG------------AUCUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 99089 0.77 0.264817
Target:  5'- gUGGCGCGGCGCCUGcGCACgGa---- -3'
miRNA:   3'- -ACCGCGCCGCGGAUcUGUGgCaaaga -5'
29629 5' -57.4 NC_006151.1 + 119452 0.77 0.284211
Target:  5'- gGGcCGCGGCGaCgUGGACGCCGUgcgCUa -3'
miRNA:   3'- aCC-GCGCCGC-GgAUCUGUGGCAaa-GA- -5'
29629 5' -57.4 NC_006151.1 + 27086 0.76 0.297754
Target:  5'- gGGCGCGGCGCa-GGGCGCgCGUgUCg -3'
miRNA:   3'- aCCGCGCCGCGgaUCUGUG-GCAaAGa -5'
29629 5' -57.4 NC_006151.1 + 64008 0.76 0.297754
Target:  5'- cGGUGCGGCGCC-AGGCGCCcgaUCg -3'
miRNA:   3'- aCCGCGCCGCGGaUCUGUGGcaaAGa -5'
29629 5' -57.4 NC_006151.1 + 61870 0.75 0.33303
Target:  5'- cGGCGCGucuGCGCCUGGACccuccagGCCGUggugCUg -3'
miRNA:   3'- aCCGCGC---CGCGGAUCUG-------UGGCAaa--GA- -5'
29629 5' -57.4 NC_006151.1 + 105689 0.74 0.415018
Target:  5'- cGGCGCGGgGCC--GACGCCGgcgCg -3'
miRNA:   3'- aCCGCGCCgCGGauCUGUGGCaaaGa -5'
29629 5' -57.4 NC_006151.1 + 122549 0.73 0.422905
Target:  5'- cGGCccgccucGCGGCGCCUGuACGCCGUgagCg -3'
miRNA:   3'- aCCG-------CGCCGCGGAUcUGUGGCAaa-Ga -5'
29629 5' -57.4 NC_006151.1 + 135164 0.73 0.44165
Target:  5'- gGGCGCGGC-CCggacGGGCGCCGg--CUg -3'
miRNA:   3'- aCCGCGCCGcGGa---UCUGUGGCaaaGA- -5'
29629 5' -57.4 NC_006151.1 + 3245 0.73 0.44165
Target:  5'- cGGCGCGGCGgCggagcgGGGCGCCGcggCg -3'
miRNA:   3'- aCCGCGCCGCgGa-----UCUGUGGCaaaGa -5'
29629 5' -57.4 NC_006151.1 + 137135 0.73 0.45074
Target:  5'- cGGCGCGGCGCgaCgcGGCGCCGg---- -3'
miRNA:   3'- aCCGCGCCGCG--GauCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 130834 0.73 0.459932
Target:  5'- aGGCGCGGCGCggAGucguCGCCGUc--- -3'
miRNA:   3'- aCCGCGCCGCGgaUCu---GUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 54425 0.73 0.459932
Target:  5'- cUGGCGCGGCGCUUcggcgacgAGGCGCCc----- -3'
miRNA:   3'- -ACCGCGCCGCGGA--------UCUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 68273 0.72 0.478608
Target:  5'- cGGuCGCGGCGCC-GGGCGCCa----- -3'
miRNA:   3'- aCC-GCGCCGCGGaUCUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 123009 0.72 0.478608
Target:  5'- cGGCGCGccccCGCCggcGGACGCCGUggCg -3'
miRNA:   3'- aCCGCGCc---GCGGa--UCUGUGGCAaaGa -5'
29629 5' -57.4 NC_006151.1 + 20150 0.72 0.488086
Target:  5'- gGGgGCGGCGCgUGGAcCGCCGg---- -3'
miRNA:   3'- aCCgCGCCGCGgAUCU-GUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 117218 0.72 0.488086
Target:  5'- gGGCGCGGCGUCgacGACGCgCGcgUCc -3'
miRNA:   3'- aCCGCGCCGCGGau-CUGUG-GCaaAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.