Results 21 - 40 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29629 | 5' | -57.4 | NC_006151.1 | + | 83625 | 0.66 | 0.837992 |
Target: 5'- cGGCGUcgcgaaGGCgGCCUGGugcuGCGCCGUg--- -3' miRNA: 3'- aCCGCG------CCG-CGGAUC----UGUGGCAaaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 118798 | 0.66 | 0.832213 |
Target: 5'- cGGCGCGGCgcaccugGCCUucgacgagaaccacgAGAgCGCCGUg--- -3' miRNA: 3'- aCCGCGCCG-------CGGA---------------UCU-GUGGCAaaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 57614 | 0.66 | 0.829709 |
Target: 5'- cGGcCGCGGcCGCCUcgacggcgcgcgAGACcCCGUUg-- -3' miRNA: 3'- aCC-GCGCC-GCGGA------------UCUGuGGCAAaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 69141 | 0.66 | 0.829709 |
Target: 5'- gGGCGCgcgGGUGCUc-GACGCCGUgccgCUc -3' miRNA: 3'- aCCGCG---CCGCGGauCUGUGGCAaa--GA- -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 107036 | 0.66 | 0.829709 |
Target: 5'- cGGCGCGGCcCCUGGccggcgaGCCGg---- -3' miRNA: 3'- aCCGCGCCGcGGAUCug-----UGGCaaaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 15050 | 0.66 | 0.821248 |
Target: 5'- gGcGCGCGGgGCCccGGCGCC--UUCUg -3' miRNA: 3'- aC-CGCGCCgCGGauCUGUGGcaAAGA- -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 15085 | 0.66 | 0.821248 |
Target: 5'- cUGGCgccccgacacGCGGCGCCUcGGgGCCGa---- -3' miRNA: 3'- -ACCG----------CGCCGCGGAuCUgUGGCaaaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 71229 | 0.66 | 0.821248 |
Target: 5'- gGGCGCGcGCGCC--GACcCCGUc--- -3' miRNA: 3'- aCCGCGC-CGCGGauCUGuGGCAaaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 39294 | 0.66 | 0.821248 |
Target: 5'- cGGCGCGGgaccucggcuuCGCC--GGCGCCGUg--- -3' miRNA: 3'- aCCGCGCC-----------GCGGauCUGUGGCAaaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 84783 | 0.66 | 0.821248 |
Target: 5'- cGGCGCGcGcCGCCgaggAGGCGCCc----- -3' miRNA: 3'- aCCGCGC-C-GCGGa---UCUGUGGcaaaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 86422 | 0.66 | 0.821248 |
Target: 5'- cGGCgucccuguccucGCGGCGCCUGG-CGCCc----- -3' miRNA: 3'- aCCG------------CGCCGCGGAUCuGUGGcaaaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 98463 | 0.66 | 0.821248 |
Target: 5'- cUGGCGCuguGGCGCCU--GCGCCa----- -3' miRNA: 3'- -ACCGCG---CCGCGGAucUGUGGcaaaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 86601 | 0.66 | 0.812614 |
Target: 5'- cUGGCGC-GCGCCgccgAGuCGCCGg---- -3' miRNA: 3'- -ACCGCGcCGCGGa---UCuGUGGCaaaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 86728 | 0.66 | 0.812614 |
Target: 5'- cGGCGCGcCGCCgcGAgGCCGg--Cg -3' miRNA: 3'- aCCGCGCcGCGGauCUgUGGCaaaGa -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 105711 | 0.66 | 0.812614 |
Target: 5'- cGGC-CGcGCGCCUcgacGGCGCCGUgcgCg -3' miRNA: 3'- aCCGcGC-CGCGGAu---CUGUGGCAaa-Ga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 118883 | 0.66 | 0.812614 |
Target: 5'- cGGCGCGGCGgCgacgcGGcCGCCGg--Cg -3' miRNA: 3'- aCCGCGCCGCgGa----UCuGUGGCaaaGa -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 136999 | 0.66 | 0.812614 |
Target: 5'- gGGCGCGcGCGCacggcgCUGGGCGCCc----- -3' miRNA: 3'- aCCGCGC-CGCG------GAUCUGUGGcaaaga -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 104271 | 0.67 | 0.803817 |
Target: 5'- cGGCGCGGCGgC-GGGC-CCGccgCUg -3' miRNA: 3'- aCCGCGCCGCgGaUCUGuGGCaaaGA- -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 78136 | 0.67 | 0.803817 |
Target: 5'- gGGcCGCgGGCGCCUcGGACgacgccucggccGCCGUggUCg -3' miRNA: 3'- aCC-GCG-CCGCGGA-UCUG------------UGGCAa-AGa -5' |
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29629 | 5' | -57.4 | NC_006151.1 | + | 53971 | 0.67 | 0.803817 |
Target: 5'- cGGCgGCGGCGCCUccgcGGGCGUCGcggCg -3' miRNA: 3'- aCCG-CGCCGCGGA----UCUGUGGCaaaGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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