miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29629 5' -57.4 NC_006151.1 + 142916 0.68 0.718733
Target:  5'- cGGCGCGG-GCaccGACACCGUc--- -3'
miRNA:   3'- aCCGCGCCgCGgauCUGUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 139620 0.68 0.748089
Target:  5'- gGGCGCGGCuggggGCCauccGGCGCCGgcgCg -3'
miRNA:   3'- aCCGCGCCG-----CGGau--CUGUGGCaaaGa -5'
29629 5' -57.4 NC_006151.1 + 137135 0.73 0.45074
Target:  5'- cGGCGCGGCGCgaCgcGGCGCCGg---- -3'
miRNA:   3'- aCCGCGCCGCG--GauCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 136999 0.66 0.812614
Target:  5'- gGGCGCGcGCGCacggcgCUGGGCGCCc----- -3'
miRNA:   3'- aCCGCGC-CGCG------GAUCUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 136592 0.7 0.637851
Target:  5'- cGcGCGCGGCuccgcgagcaCCUGGACGCCGUcaacgUCa -3'
miRNA:   3'- aC-CGCGCCGc---------GGAUCUGUGGCAa----AGa -5'
29629 5' -57.4 NC_006151.1 + 135621 0.66 0.846088
Target:  5'- cGGcCGCGGCGCCc--GCACCa----- -3'
miRNA:   3'- aCC-GCGCCGCGGaucUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 135164 0.73 0.44165
Target:  5'- gGGCGCGGC-CCggacGGGCGCCGg--CUg -3'
miRNA:   3'- aCCGCGCCGcGGa---UCUGUGGCaaaGA- -5'
29629 5' -57.4 NC_006151.1 + 131132 0.71 0.565649
Target:  5'- aGGcCGCGGCGCCgcGGCcgucauaGCCGUcgUCg -3'
miRNA:   3'- aCC-GCGCCGCGGauCUG-------UGGCAa-AGa -5'
29629 5' -57.4 NC_006151.1 + 130834 0.73 0.459932
Target:  5'- aGGCGCGGCGCggAGucguCGCCGUc--- -3'
miRNA:   3'- aCCGCGCCGCGgaUCu---GUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 130683 0.68 0.748089
Target:  5'- gGGCGCGGCGCa-GGAUGuCCGg---- -3'
miRNA:   3'- aCCGCGCCGCGgaUCUGU-GGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 130493 0.7 0.637851
Target:  5'- aGcGCGCGGCGCCac-ACGCCGcgcgUCUc -3'
miRNA:   3'- aC-CGCGCCGCGGaucUGUGGCaa--AGA- -5'
29629 5' -57.4 NC_006151.1 + 129127 0.66 0.846088
Target:  5'- aGGCGCgcugGGCGCCaaAGAgCGCCGgcgCa -3'
miRNA:   3'- aCCGCG----CCGCGGa-UCU-GUGGCaaaGa -5'
29629 5' -57.4 NC_006151.1 + 129054 0.69 0.658266
Target:  5'- cGGUGCGGCuccGCCgAGcACGCCGUgaUCa -3'
miRNA:   3'- aCCGCGCCG---CGGaUC-UGUGGCAa-AGa -5'
29629 5' -57.4 NC_006151.1 + 128555 0.69 0.662341
Target:  5'- cGGCGCGGUGCCgcccAaagagcgccucgggcGACAUCGUcUCg -3'
miRNA:   3'- aCCGCGCCGCGGa---U---------------CUGUGGCAaAGa -5'
29629 5' -57.4 NC_006151.1 + 128022 0.7 0.607214
Target:  5'- cGGCGaCGGCGUCUGcGACGCCc----- -3'
miRNA:   3'- aCCGC-GCCGCGGAU-CUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 126029 0.66 0.853991
Target:  5'- gGGCcuCGGCGaCgUGGGCGCCGccgUCg -3'
miRNA:   3'- aCCGc-GCCGC-GgAUCUGUGGCaa-AGa -5'
29629 5' -57.4 NC_006151.1 + 125258 0.67 0.785768
Target:  5'- cGGCGgGGaCGCCcgAGcCGCCGgccgUCa -3'
miRNA:   3'- aCCGCgCC-GCGGa-UCuGUGGCaa--AGa -5'
29629 5' -57.4 NC_006151.1 + 124045 0.68 0.728604
Target:  5'- cGGCGaguaCGGCGaCCUGGACGCgCGg---- -3'
miRNA:   3'- aCCGC----GCCGC-GGAUCUGUG-GCaaaga -5'
29629 5' -57.4 NC_006151.1 + 123910 0.67 0.767168
Target:  5'- cGGCGCGGCGgCCguGACGCgGg---- -3'
miRNA:   3'- aCCGCGCCGC-GGauCUGUGgCaaaga -5'
29629 5' -57.4 NC_006151.1 + 123763 0.69 0.68871
Target:  5'- uUGGCGCGG-GCCccggGGGCAUCGg---- -3'
miRNA:   3'- -ACCGCGCCgCGGa---UCUGUGGCaaaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.