miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29630 3' -62.9 NC_006151.1 + 28805 0.68 0.452588
Target:  5'- cGCGGGACgGGCguccGGgacCGGCCAaugcgggcCCCGg -3'
miRNA:   3'- uCGCCCUGgCCGa---CCa--GCUGGU--------GGGU- -5'
29630 3' -62.9 NC_006151.1 + 20213 0.68 0.452588
Target:  5'- cAGCGccGGGCCGcGCaGG-CGACCccGCCCAa -3'
miRNA:   3'- -UCGC--CCUGGC-CGaCCaGCUGG--UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 19282 0.68 0.45171
Target:  5'- cGCGGGGCCcaccggggccagcGGCgcgGG-CGGCCggucGCCCAc -3'
miRNA:   3'- uCGCCCUGG-------------CCGa--CCaGCUGG----UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 21542 0.68 0.443851
Target:  5'- gGGcCGGGGCCGGggcCUGGgccUCGGCgaGCCCGc -3'
miRNA:   3'- -UC-GCCCUGGCC---GACC---AGCUGg-UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 61782 0.69 0.435209
Target:  5'- uGCGGcgcgaggccGGCCGGCUGG-CGuuCCAgCCCAg -3'
miRNA:   3'- uCGCC---------CUGGCCGACCaGCu-GGU-GGGU- -5'
29630 3' -62.9 NC_006151.1 + 105597 0.69 0.435209
Target:  5'- cGCGcGGAgCGGCUgccgcGGUgGAucCCGCCCAa -3'
miRNA:   3'- uCGC-CCUgGCCGA-----CCAgCU--GGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 121922 0.69 0.435209
Target:  5'- gAGgGGGACCGcguGCUGGgggcgcUGGCCGCCg- -3'
miRNA:   3'- -UCgCCCUGGC---CGACCa-----GCUGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 105692 0.69 0.435209
Target:  5'- cGCGGGGCCGacGCcGGcgCGGCCGCgCGc -3'
miRNA:   3'- uCGCCCUGGC--CGaCCa-GCUGGUGgGU- -5'
29630 3' -62.9 NC_006151.1 + 84042 0.69 0.426665
Target:  5'- uGCGuGGugCGGCUGGggguggGGCCGCaCCu -3'
miRNA:   3'- uCGC-CCugGCCGACCag----CUGGUG-GGu -5'
29630 3' -62.9 NC_006151.1 + 18211 0.69 0.424122
Target:  5'- aAGCGGGGCgggcauucaacaggCGGCUGG-CGGUCACgCCAu -3'
miRNA:   3'- -UCGCCCUG--------------GCCGACCaGCUGGUG-GGU- -5'
29630 3' -62.9 NC_006151.1 + 20147 0.69 0.418222
Target:  5'- cGCGGGGgCGGC-GcGUgGACCGCCgGg -3'
miRNA:   3'- uCGCCCUgGCCGaC-CAgCUGGUGGgU- -5'
29630 3' -62.9 NC_006151.1 + 55062 0.69 0.418222
Target:  5'- cGGCGaGGAcCCGGCgGGcUCGGCCGCg-- -3'
miRNA:   3'- -UCGC-CCU-GGCCGaCC-AGCUGGUGggu -5'
29630 3' -62.9 NC_006151.1 + 127334 0.69 0.409881
Target:  5'- gGGCGGGgguGCUGGUacacgUGGUCGGucUCGCCCu -3'
miRNA:   3'- -UCGCCC---UGGCCG-----ACCAGCU--GGUGGGu -5'
29630 3' -62.9 NC_006151.1 + 5661 0.69 0.393514
Target:  5'- cGGCGGGGgaGGCUGGggaagCGgGCC-CCCGc -3'
miRNA:   3'- -UCGCCCUggCCGACCa----GC-UGGuGGGU- -5'
29630 3' -62.9 NC_006151.1 + 69466 0.69 0.393514
Target:  5'- cGCGGGcGCCGGCaccGUCGccGCCGCCUc -3'
miRNA:   3'- uCGCCC-UGGCCGac-CAGC--UGGUGGGu -5'
29630 3' -62.9 NC_006151.1 + 90694 0.7 0.385491
Target:  5'- cGGCGGGGgCGGC-GGacgCGcCCGCCCc -3'
miRNA:   3'- -UCGCCCUgGCCGaCCa--GCuGGUGGGu -5'
29630 3' -62.9 NC_006151.1 + 85159 0.7 0.385491
Target:  5'- cGGCagGGGGCCGGCgccgcgGG-CGccGCCGCCCc -3'
miRNA:   3'- -UCG--CCCUGGCCGa-----CCaGC--UGGUGGGu -5'
29630 3' -62.9 NC_006151.1 + 96392 0.7 0.369773
Target:  5'- cGCGGuGCCGGCgcacGG-CGGCCGCCa- -3'
miRNA:   3'- uCGCCcUGGCCGa---CCaGCUGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 139604 0.7 0.347031
Target:  5'- gAGCGGcGGCCcguccgggcgcGGCUGGg-GGCCAUCCGg -3'
miRNA:   3'- -UCGCC-CUGG-----------CCGACCagCUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 10571 0.7 0.347031
Target:  5'- uGGCGcGGCCGGCUcGG-CGGCCcgGCCCu -3'
miRNA:   3'- -UCGCcCUGGCCGA-CCaGCUGG--UGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.