miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29630 3' -62.9 NC_006151.1 + 47234 0.66 0.563707
Target:  5'- gGGCGGcucggcugguuGGCUGGCUGGcgagaUgGACCGCuCCGg -3'
miRNA:   3'- -UCGCC-----------CUGGCCGACC-----AgCUGGUG-GGU- -5'
29630 3' -62.9 NC_006151.1 + 103419 0.66 0.563707
Target:  5'- cGCuGGGcCCGGC-GGUgGACCugCUc -3'
miRNA:   3'- uCG-CCCuGGCCGaCCAgCUGGugGGu -5'
29630 3' -62.9 NC_006151.1 + 28106 0.67 0.557933
Target:  5'- gAGCGGGGCgCGGCUccucGUCGGCUcggggcgcgcuccgcGCCUc -3'
miRNA:   3'- -UCGCCCUG-GCCGAc---CAGCUGG---------------UGGGu -5'
29630 3' -62.9 NC_006151.1 + 137738 0.67 0.554093
Target:  5'- cGCGGuGGCCGGCgccgacacGGUCcGCgGCCUg -3'
miRNA:   3'- uCGCC-CUGGCCGa-------CCAGcUGgUGGGu -5'
29630 3' -62.9 NC_006151.1 + 29403 0.67 0.554093
Target:  5'- aGGCGGGACCgcgcggagaaGGCUcGGUgUGGCCGCg-- -3'
miRNA:   3'- -UCGCCCUGG----------CCGA-CCA-GCUGGUGggu -5'
29630 3' -62.9 NC_006151.1 + 29212 0.67 0.553134
Target:  5'- cGGCGGGguggggaugggucACCGcCgGGUCGGCCGCgCCc -3'
miRNA:   3'- -UCGCCC-------------UGGCcGaCCAGCUGGUG-GGu -5'
29630 3' -62.9 NC_006151.1 + 2614 0.67 0.544527
Target:  5'- cAGCGGGACCGG--GGUCcGggGCCCGg -3'
miRNA:   3'- -UCGCCCUGGCCgaCCAGcUggUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 120743 0.67 0.544527
Target:  5'- cGCGGGAcCCGGCcgcgucauggccUGGgugCGG-CGCCCGc -3'
miRNA:   3'- uCGCCCU-GGCCG------------ACCa--GCUgGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 2284 0.67 0.544527
Target:  5'- cGGCGGGGCgcccgCGGC-GG-CGACggCGCCCGg -3'
miRNA:   3'- -UCGCCCUG-----GCCGaCCaGCUG--GUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 132837 0.67 0.544527
Target:  5'- cGCGGGA-CGGCcaccacgGG-CGGCCgGCCCGg -3'
miRNA:   3'- uCGCCCUgGCCGa------CCaGCUGG-UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 106240 0.67 0.535016
Target:  5'- cGCGGuGGCCGGCgagcCGACgCACCUg -3'
miRNA:   3'- uCGCC-CUGGCCGaccaGCUG-GUGGGu -5'
29630 3' -62.9 NC_006151.1 + 10908 0.67 0.525564
Target:  5'- cGGCGcGGACCGG--GGUCGG--GCCCAc -3'
miRNA:   3'- -UCGC-CCUGGCCgaCCAGCUggUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 65042 0.67 0.516176
Target:  5'- cAGgGGGcCCGGCggcGG-CGGgCGCCCGu -3'
miRNA:   3'- -UCgCCCuGGCCGa--CCaGCUgGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 52389 0.67 0.506856
Target:  5'- cGCGGGGgCGGCgGG-CG-CCGCCg- -3'
miRNA:   3'- uCGCCCUgGCCGaCCaGCuGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 139649 0.68 0.497608
Target:  5'- cGCGGGGguCgCGGCgGG-CGcGCCGCCCGa -3'
miRNA:   3'- uCGCCCU--G-GCCGaCCaGC-UGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 141317 0.68 0.497608
Target:  5'- gGGCGGGuCCGGgaUGGUC-ACCGCgUAc -3'
miRNA:   3'- -UCGCCCuGGCCg-ACCAGcUGGUGgGU- -5'
29630 3' -62.9 NC_006151.1 + 28524 0.68 0.494849
Target:  5'- cGCGGGACgGGCguccGGgacCGGCCaaugggggagccguGCCCGc -3'
miRNA:   3'- uCGCCCUGgCCGa---CCa--GCUGG--------------UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 32844 0.68 0.488437
Target:  5'- gAGgGGGGCCGGCggggaugGGgaagaaGGCCcgACCCGc -3'
miRNA:   3'- -UCgCCCUGGCCGa------CCag----CUGG--UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 102891 0.68 0.479346
Target:  5'- uGGCGGGccugcGCCGccucgucgacucGCUGG-CGGCCGCCgAg -3'
miRNA:   3'- -UCGCCC-----UGGC------------CGACCaGCUGGUGGgU- -5'
29630 3' -62.9 NC_006151.1 + 28805 0.68 0.452588
Target:  5'- cGCGGGACgGGCguccGGgacCGGCCAaugcgggcCCCGg -3'
miRNA:   3'- uCGCCCUGgCCGa---CCa--GCUGGU--------GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.