miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29630 3' -62.9 NC_006151.1 + 28805 0.68 0.452588
Target:  5'- cGCGGGACgGGCguccGGgacCGGCCAaugcgggcCCCGg -3'
miRNA:   3'- uCGCCCUGgCCGa---CCa--GCUGGU--------GGGU- -5'
29630 3' -62.9 NC_006151.1 + 29212 0.67 0.553134
Target:  5'- cGGCGGGguggggaugggucACCGcCgGGUCGGCCGCgCCc -3'
miRNA:   3'- -UCGCCC-------------UGGCcGaCCAGCUGGUG-GGu -5'
29630 3' -62.9 NC_006151.1 + 29403 0.67 0.554093
Target:  5'- aGGCGGGACCgcgcggagaaGGCUcGGUgUGGCCGCg-- -3'
miRNA:   3'- -UCGCCCUGG----------CCGA-CCA-GCUGGUGggu -5'
29630 3' -62.9 NC_006151.1 + 32844 0.68 0.488437
Target:  5'- gAGgGGGGCCGGCggggaugGGgaagaaGGCCcgACCCGc -3'
miRNA:   3'- -UCgCCCUGGCCGa------CCag----CUGG--UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 33262 0.66 0.612322
Target:  5'- gGGUGGGGCggUGGC-GG-CGGCCaucGCCCGa -3'
miRNA:   3'- -UCGCCCUG--GCCGaCCaGCUGG---UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 46727 0.73 0.237407
Target:  5'- gGGcCGGGGCCGGCccggGGUCGGCgaaCACCg- -3'
miRNA:   3'- -UC-GCCCUGGCCGa---CCAGCUG---GUGGgu -5'
29630 3' -62.9 NC_006151.1 + 47234 0.66 0.563707
Target:  5'- gGGCGGcucggcugguuGGCUGGCUGGcgagaUgGACCGCuCCGg -3'
miRNA:   3'- -UCGCC-----------CUGGCCGACC-----AgCUGGUG-GGU- -5'
29630 3' -62.9 NC_006151.1 + 52389 0.67 0.506856
Target:  5'- cGCGGGGgCGGCgGG-CG-CCGCCg- -3'
miRNA:   3'- uCGCCCUgGCCGaCCaGCuGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 55062 0.69 0.418222
Target:  5'- cGGCGaGGAcCCGGCgGGcUCGGCCGCg-- -3'
miRNA:   3'- -UCGC-CCU-GGCCGaCC-AGCUGGUGggu -5'
29630 3' -62.9 NC_006151.1 + 55442 0.66 0.583062
Target:  5'- cGGaCGGGACCGGCgccGcCGGCCccGCCgGg -3'
miRNA:   3'- -UC-GCCCUGGCCGac-CaGCUGG--UGGgU- -5'
29630 3' -62.9 NC_006151.1 + 59424 0.66 0.573366
Target:  5'- cAGCGGcGCCaGCUcgGcGUCGGCCGCCg- -3'
miRNA:   3'- -UCGCCcUGGcCGA--C-CAGCUGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 61782 0.69 0.435209
Target:  5'- uGCGGcgcgaggccGGCCGGCUGG-CGuuCCAgCCCAg -3'
miRNA:   3'- uCGCC---------CUGGCCGACCaGCu-GGU-GGGU- -5'
29630 3' -62.9 NC_006151.1 + 64343 0.68 0.452588
Target:  5'- cGGCGGGaagcGCgGGCc-GUCGGCCcCCCAg -3'
miRNA:   3'- -UCGCCC----UGgCCGacCAGCUGGuGGGU- -5'
29630 3' -62.9 NC_006151.1 + 64755 0.71 0.342604
Target:  5'- cAGCGGGGCCaccgugcgcgggGGCUGGUugccggggcgcgagcUGGCCACgCCc -3'
miRNA:   3'- -UCGCCCUGG------------CCGACCA---------------GCUGGUG-GGu -5'
29630 3' -62.9 NC_006151.1 + 65042 0.67 0.516176
Target:  5'- cAGgGGGcCCGGCggcGG-CGGgCGCCCGu -3'
miRNA:   3'- -UCgCCCuGGCCGa--CCaGCUgGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 66464 0.66 0.612322
Target:  5'- cGGUGGucCCGGC-GGUCGGCaCGCUg- -3'
miRNA:   3'- -UCGCCcuGGCCGaCCAGCUG-GUGGgu -5'
29630 3' -62.9 NC_006151.1 + 69466 0.69 0.393514
Target:  5'- cGCGGGcGCCGGCaccGUCGccGCCGCCUc -3'
miRNA:   3'- uCGCCC-UGGCCGac-CAGC--UGGUGGGu -5'
29630 3' -62.9 NC_006151.1 + 71982 0.66 0.583062
Target:  5'- cGGCGGGGgCaGCUGGUagcGCCGgCCGu -3'
miRNA:   3'- -UCGCCCUgGcCGACCAgc-UGGUgGGU- -5'
29630 3' -62.9 NC_006151.1 + 74143 0.73 0.254406
Target:  5'- cAGCGGGuGCCGGg-GGUCGuCCguGCCCAc -3'
miRNA:   3'- -UCGCCC-UGGCCgaCCAGCuGG--UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 75399 0.66 0.612322
Target:  5'- gGGCGGGugCGuGCgcgGGUCcgGGagGCCCGg -3'
miRNA:   3'- -UCGCCCugGC-CGa--CCAG--CUggUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.