miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29630 3' -62.9 NC_006151.1 + 2115 0.74 0.206266
Target:  5'- cGCGGGGCCGGCc-GUCG-CCGCCgCGg -3'
miRNA:   3'- uCGCCCUGGCCGacCAGCuGGUGG-GU- -5'
29630 3' -62.9 NC_006151.1 + 2284 0.67 0.544527
Target:  5'- cGGCGGGGCgcccgCGGC-GG-CGACggCGCCCGg -3'
miRNA:   3'- -UCGCCCUG-----GCCGaCCaGCUG--GUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 2455 0.66 0.573366
Target:  5'- cAGCGGGgcGCCGaGCccccagcGGUUGGCCGCgCGg -3'
miRNA:   3'- -UCGCCC--UGGC-CGa------CCAGCUGGUGgGU- -5'
29630 3' -62.9 NC_006151.1 + 2614 0.67 0.544527
Target:  5'- cAGCGGGACCGG--GGUCcGggGCCCGg -3'
miRNA:   3'- -UCGCCCUGGCCgaCCAGcUggUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 5094 0.71 0.325307
Target:  5'- cGGCGGGcGCCGGCggagacGGU-GGCgGCCCGg -3'
miRNA:   3'- -UCGCCC-UGGCCGa-----CCAgCUGgUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 5661 0.69 0.393514
Target:  5'- cGGCGGGGgaGGCUGGggaagCGgGCC-CCCGc -3'
miRNA:   3'- -UCGCCCUggCCGACCa----GC-UGGuGGGU- -5'
29630 3' -62.9 NC_006151.1 + 10571 0.7 0.347031
Target:  5'- uGGCGcGGCCGGCUcGG-CGGCCcgGCCCu -3'
miRNA:   3'- -UCGCcCUGGCCGA-CCaGCUGG--UGGGu -5'
29630 3' -62.9 NC_006151.1 + 10908 0.67 0.525564
Target:  5'- cGGCGcGGACCGG--GGUCGG--GCCCAc -3'
miRNA:   3'- -UCGC-CCUGGCCgaCCAGCUggUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 10994 0.66 0.573366
Target:  5'- gAGCGGG-CCGGg-GGcccCGGCuCGCCCGc -3'
miRNA:   3'- -UCGCCCuGGCCgaCCa--GCUG-GUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 14577 1.07 0.00086
Target:  5'- gAGCGGGACCGGCUGGUCGACCACCCAu -3'
miRNA:   3'- -UCGCCCUGGCCGACCAGCUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 17827 0.73 0.248631
Target:  5'- cGGCGGGGCgGGC-GGcC-ACCACCCGc -3'
miRNA:   3'- -UCGCCCUGgCCGaCCaGcUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 18211 0.69 0.424122
Target:  5'- aAGCGGGGCgggcauucaacaggCGGCUGG-CGGUCACgCCAu -3'
miRNA:   3'- -UCGCCCUG--------------GCCGACCaGCUGGUG-GGU- -5'
29630 3' -62.9 NC_006151.1 + 19282 0.68 0.45171
Target:  5'- cGCGGGGCCcaccggggccagcGGCgcgGG-CGGCCggucGCCCAc -3'
miRNA:   3'- uCGCCCUGG-------------CCGa--CCaGCUGG----UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 20147 0.69 0.418222
Target:  5'- cGCGGGGgCGGC-GcGUgGACCGCCgGg -3'
miRNA:   3'- uCGCCCUgGCCGaC-CAgCUGGUGGgU- -5'
29630 3' -62.9 NC_006151.1 + 20213 0.68 0.452588
Target:  5'- cAGCGccGGGCCGcGCaGG-CGACCccGCCCAa -3'
miRNA:   3'- -UCGC--CCUGGC-CGaCCaGCUGG--UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 21337 0.71 0.321085
Target:  5'- cGGCGGGGgucCgCGGCUGGaacggcuccgcgggcUgCGGCCACCCGc -3'
miRNA:   3'- -UCGCCCU---G-GCCGACC---------------A-GCUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 21542 0.68 0.443851
Target:  5'- gGGcCGGGGCCGGggcCUGGgccUCGGCgaGCCCGc -3'
miRNA:   3'- -UC-GCCCUGGCC---GACC---AGCUGg-UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 27665 0.66 0.573366
Target:  5'- uGGauGGAUugaaUGGgUGGUCGACCAgCCGg -3'
miRNA:   3'- -UCgcCCUG----GCCgACCAGCUGGUgGGU- -5'
29630 3' -62.9 NC_006151.1 + 28106 0.67 0.557933
Target:  5'- gAGCGGGGCgCGGCUccucGUCGGCUcggggcgcgcuccgcGCCUc -3'
miRNA:   3'- -UCGCCCUG-GCCGAc---CAGCUGG---------------UGGGu -5'
29630 3' -62.9 NC_006151.1 + 28524 0.68 0.494849
Target:  5'- cGCGGGACgGGCguccGGgacCGGCCaaugggggagccguGCCCGc -3'
miRNA:   3'- uCGCCCUGgCCGa---CCa--GCUGG--------------UGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.