miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29630 3' -62.9 NC_006151.1 + 14577 1.07 0.00086
Target:  5'- gAGCGGGACCGGCUGGUCGACCACCCAu -3'
miRNA:   3'- -UCGCCCUGGCCGACCAGCUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 2115 0.74 0.206266
Target:  5'- cGCGGGGCCGGCc-GUCG-CCGCCgCGg -3'
miRNA:   3'- uCGCCCUGGCCGacCAGCuGGUGG-GU- -5'
29630 3' -62.9 NC_006151.1 + 89132 0.74 0.206266
Target:  5'- cGGCGGGACCGGggGcGUCGAgaCCgcGCCCGc -3'
miRNA:   3'- -UCGCCCUGGCCgaC-CAGCU--GG--UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 128543 0.74 0.211199
Target:  5'- cGGCGGGcccGCCGGCgcGGU--GCCGCCCAa -3'
miRNA:   3'- -UCGCCC---UGGCCGa-CCAgcUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 135123 0.73 0.228736
Target:  5'- cGCGGGGCgGGCUGGgcggggacgggcaGACCcaGCCCGg -3'
miRNA:   3'- uCGCCCUGgCCGACCag-----------CUGG--UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 46727 0.73 0.237407
Target:  5'- gGGcCGGGGCCGGCccggGGUCGGCgaaCACCg- -3'
miRNA:   3'- -UC-GCCCUGGCCGa---CCAGCUG---GUGGgu -5'
29630 3' -62.9 NC_006151.1 + 17827 0.73 0.248631
Target:  5'- cGGCGGGGCgGGC-GGcC-ACCACCCGc -3'
miRNA:   3'- -UCGCCCUGgCCGaCCaGcUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 74143 0.73 0.254406
Target:  5'- cAGCGGGuGCCGGg-GGUCGuCCguGCCCAc -3'
miRNA:   3'- -UCGCCC-UGGCCgaCCAGCuGG--UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 130966 0.71 0.318294
Target:  5'- cGCgGGGGCCGGUacccCGGCCGCCCGg -3'
miRNA:   3'- uCG-CCCUGGCCGaccaGCUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 21337 0.71 0.321085
Target:  5'- cGGCGGGGgucCgCGGCUGGaacggcuccgcgggcUgCGGCCACCCGc -3'
miRNA:   3'- -UCGCCCU---G-GCCGACC---------------A-GCUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 5094 0.71 0.325307
Target:  5'- cGGCGGGcGCCGGCggagacGGU-GGCgGCCCGg -3'
miRNA:   3'- -UCGCCC-UGGCCGa-----CCAgCUGgUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 121091 0.71 0.332434
Target:  5'- cGGCGGcGCCgGGCUGcaCGACCACUCGc -3'
miRNA:   3'- -UCGCCcUGG-CCGACcaGCUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 82639 0.71 0.338946
Target:  5'- cGCGGGACCccccugcGGCgagGG-CGGCCcACCCu -3'
miRNA:   3'- uCGCCCUGG-------CCGa--CCaGCUGG-UGGGu -5'
29630 3' -62.9 NC_006151.1 + 64755 0.71 0.342604
Target:  5'- cAGCGGGGCCaccgugcgcgggGGCUGGUugccggggcgcgagcUGGCCACgCCc -3'
miRNA:   3'- -UCGCCCUGG------------CCGACCA---------------GCUGGUG-GGu -5'
29630 3' -62.9 NC_006151.1 + 10571 0.7 0.347031
Target:  5'- uGGCGcGGCCGGCUcGG-CGGCCcgGCCCu -3'
miRNA:   3'- -UCGCcCUGGCCGA-CCaGCUGG--UGGGu -5'
29630 3' -62.9 NC_006151.1 + 139604 0.7 0.347031
Target:  5'- gAGCGGcGGCCcguccgggcgcGGCUGGg-GGCCAUCCGg -3'
miRNA:   3'- -UCGCC-CUGG-----------CCGACCagCUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 96392 0.7 0.369773
Target:  5'- cGCGGuGCCGGCgcacGG-CGGCCGCCa- -3'
miRNA:   3'- uCGCCcUGGCCGa---CCaGCUGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 90694 0.7 0.385491
Target:  5'- cGGCGGGGgCGGC-GGacgCGcCCGCCCc -3'
miRNA:   3'- -UCGCCCUgGCCGaCCa--GCuGGUGGGu -5'
29630 3' -62.9 NC_006151.1 + 85159 0.7 0.385491
Target:  5'- cGGCagGGGGCCGGCgccgcgGG-CGccGCCGCCCc -3'
miRNA:   3'- -UCG--CCCUGGCCGa-----CCaGC--UGGUGGGu -5'
29630 3' -62.9 NC_006151.1 + 5661 0.69 0.393514
Target:  5'- cGGCGGGGgaGGCUGGggaagCGgGCC-CCCGc -3'
miRNA:   3'- -UCGCCCUggCCGACCa----GC-UGGuGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.