Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29630 | 3' | -62.9 | NC_006151.1 | + | 14577 | 1.07 | 0.00086 |
Target: 5'- gAGCGGGACCGGCUGGUCGACCACCCAu -3' miRNA: 3'- -UCGCCCUGGCCGACCAGCUGGUGGGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 127381 | 0.66 | 0.583062 |
Target: 5'- cGCGGGGgUGGCgGGggccgCGGCCgagucgacgggaGCCCGc -3' miRNA: 3'- uCGCCCUgGCCGaCCa----GCUGG------------UGGGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 55442 | 0.66 | 0.583062 |
Target: 5'- cGGaCGGGACCGGCgccGcCGGCCccGCCgGg -3' miRNA: 3'- -UC-GCCCUGGCCGac-CaGCUGG--UGGgU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 71982 | 0.66 | 0.583062 |
Target: 5'- cGGCGGGGgCaGCUGGUagcGCCGgCCGu -3' miRNA: 3'- -UCGCCCUgGcCGACCAgc-UGGUgGGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 59424 | 0.66 | 0.573366 |
Target: 5'- cAGCGGcGCCaGCUcgGcGUCGGCCGCCg- -3' miRNA: 3'- -UCGCCcUGGcCGA--C-CAGCUGGUGGgu -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 118877 | 0.66 | 0.573366 |
Target: 5'- cAGCGGcGGCgCGGC-GGcgacgCGGCCGCCg- -3' miRNA: 3'- -UCGCC-CUG-GCCGaCCa----GCUGGUGGgu -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 27665 | 0.66 | 0.573366 |
Target: 5'- uGGauGGAUugaaUGGgUGGUCGACCAgCCGg -3' miRNA: 3'- -UCgcCCUG----GCCgACCAGCUGGUgGGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 10994 | 0.66 | 0.573366 |
Target: 5'- gAGCGGG-CCGGg-GGcccCGGCuCGCCCGc -3' miRNA: 3'- -UCGCCCuGGCCgaCCa--GCUG-GUGGGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 2455 | 0.66 | 0.573366 |
Target: 5'- cAGCGGGgcGCCGaGCccccagcGGUUGGCCGCgCGg -3' miRNA: 3'- -UCGCCC--UGGC-CGa------CCAGCUGGUGgGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 80333 | 0.66 | 0.602546 |
Target: 5'- uGGgGGGACCggGGCgagGG-CGGcucuCCGCCCGu -3' miRNA: 3'- -UCgCCCUGG--CCGa--CCaGCU----GGUGGGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 101919 | 0.66 | 0.602546 |
Target: 5'- aAGCGGcGCCGGCccccgUGGcCGGCgAgCCAg -3' miRNA: 3'- -UCGCCcUGGCCG-----ACCaGCUGgUgGGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 117261 | 0.66 | 0.602546 |
Target: 5'- aGGCGcGGGCCGcGCg---CGGCCGCCg- -3' miRNA: 3'- -UCGC-CCUGGC-CGaccaGCUGGUGGgu -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 126386 | 0.66 | 0.612322 |
Target: 5'- cAGCGGGcCCGcGCUGc-UGGCCAgCCGc -3' miRNA: 3'- -UCGCCCuGGC-CGACcaGCUGGUgGGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 75463 | 0.66 | 0.612322 |
Target: 5'- uAGCGGucggcGGCCGGCUuGaaGACC-CCCAg -3' miRNA: 3'- -UCGCC-----CUGGCCGAcCagCUGGuGGGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 66464 | 0.66 | 0.612322 |
Target: 5'- cGGUGGucCCGGC-GGUCGGCaCGCUg- -3' miRNA: 3'- -UCGCCcuGGCCGaCCAGCUG-GUGGgu -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 33262 | 0.66 | 0.612322 |
Target: 5'- gGGUGGGGCggUGGC-GG-CGGCCaucGCCCGa -3' miRNA: 3'- -UCGCCCUG--GCCGaCCaGCUGG---UGGGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 142016 | 0.66 | 0.612322 |
Target: 5'- gGGCGGGugUGGCaccacgugGGUgcaucUGACC-CCCu -3' miRNA: 3'- -UCGCCCugGCCGa-------CCA-----GCUGGuGGGu -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 127266 | 0.66 | 0.612322 |
Target: 5'- cGCGGuGGCCGGUgaGGUCGAUgACg-- -3' miRNA: 3'- uCGCC-CUGGCCGa-CCAGCUGgUGggu -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 75399 | 0.66 | 0.612322 |
Target: 5'- gGGCGGGugCGuGCgcgGGUCcgGGagGCCCGg -3' miRNA: 3'- -UCGCCCugGC-CGa--CCAG--CUggUGGGU- -5' |
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29630 | 3' | -62.9 | NC_006151.1 | + | 106194 | 0.66 | 0.602546 |
Target: 5'- cGCuGGAgCCGGC-GGUgCGGCuCGCCCu -3' miRNA: 3'- uCGcCCU-GGCCGaCCA-GCUG-GUGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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