miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29630 3' -62.9 NC_006151.1 + 69466 0.69 0.393514
Target:  5'- cGCGGGcGCCGGCaccGUCGccGCCGCCUc -3'
miRNA:   3'- uCGCCC-UGGCCGac-CAGC--UGGUGGGu -5'
29630 3' -62.9 NC_006151.1 + 127334 0.69 0.409881
Target:  5'- gGGCGGGgguGCUGGUacacgUGGUCGGucUCGCCCu -3'
miRNA:   3'- -UCGCCC---UGGCCG-----ACCAGCU--GGUGGGu -5'
29630 3' -62.9 NC_006151.1 + 20147 0.69 0.418222
Target:  5'- cGCGGGGgCGGC-GcGUgGACCGCCgGg -3'
miRNA:   3'- uCGCCCUgGCCGaC-CAgCUGGUGGgU- -5'
29630 3' -62.9 NC_006151.1 + 55062 0.69 0.418222
Target:  5'- cGGCGaGGAcCCGGCgGGcUCGGCCGCg-- -3'
miRNA:   3'- -UCGC-CCU-GGCCGaCC-AGCUGGUGggu -5'
29630 3' -62.9 NC_006151.1 + 18211 0.69 0.424122
Target:  5'- aAGCGGGGCgggcauucaacaggCGGCUGG-CGGUCACgCCAu -3'
miRNA:   3'- -UCGCCCUG--------------GCCGACCaGCUGGUG-GGU- -5'
29630 3' -62.9 NC_006151.1 + 84042 0.69 0.426665
Target:  5'- uGCGuGGugCGGCUGGggguggGGCCGCaCCu -3'
miRNA:   3'- uCGC-CCugGCCGACCag----CUGGUG-GGu -5'
29630 3' -62.9 NC_006151.1 + 61782 0.69 0.435209
Target:  5'- uGCGGcgcgaggccGGCCGGCUGG-CGuuCCAgCCCAg -3'
miRNA:   3'- uCGCC---------CUGGCCGACCaGCu-GGU-GGGU- -5'
29630 3' -62.9 NC_006151.1 + 105692 0.69 0.435209
Target:  5'- cGCGGGGCCGacGCcGGcgCGGCCGCgCGc -3'
miRNA:   3'- uCGCCCUGGC--CGaCCa-GCUGGUGgGU- -5'
29630 3' -62.9 NC_006151.1 + 121922 0.69 0.435209
Target:  5'- gAGgGGGACCGcguGCUGGgggcgcUGGCCGCCg- -3'
miRNA:   3'- -UCgCCCUGGC---CGACCa-----GCUGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 105597 0.69 0.435209
Target:  5'- cGCGcGGAgCGGCUgccgcGGUgGAucCCGCCCAa -3'
miRNA:   3'- uCGC-CCUgGCCGA-----CCAgCU--GGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 21542 0.68 0.443851
Target:  5'- gGGcCGGGGCCGGggcCUGGgccUCGGCgaGCCCGc -3'
miRNA:   3'- -UC-GCCCUGGCC---GACC---AGCUGg-UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 19282 0.68 0.45171
Target:  5'- cGCGGGGCCcaccggggccagcGGCgcgGG-CGGCCggucGCCCAc -3'
miRNA:   3'- uCGCCCUGG-------------CCGa--CCaGCUGG----UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 20213 0.68 0.452588
Target:  5'- cAGCGccGGGCCGcGCaGG-CGACCccGCCCAa -3'
miRNA:   3'- -UCGC--CCUGGC-CGaCCaGCUGG--UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 64343 0.68 0.452588
Target:  5'- cGGCGGGaagcGCgGGCc-GUCGGCCcCCCAg -3'
miRNA:   3'- -UCGCCC----UGgCCGacCAGCUGGuGGGU- -5'
29630 3' -62.9 NC_006151.1 + 28805 0.68 0.452588
Target:  5'- cGCGGGACgGGCguccGGgacCGGCCAaugcgggcCCCGg -3'
miRNA:   3'- uCGCCCUGgCCGa---CCa--GCUGGU--------GGGU- -5'
29630 3' -62.9 NC_006151.1 + 102891 0.68 0.479346
Target:  5'- uGGCGGGccugcGCCGccucgucgacucGCUGG-CGGCCGCCgAg -3'
miRNA:   3'- -UCGCCC-----UGGC------------CGACCaGCUGGUGGgU- -5'
29630 3' -62.9 NC_006151.1 + 32844 0.68 0.488437
Target:  5'- gAGgGGGGCCGGCggggaugGGgaagaaGGCCcgACCCGc -3'
miRNA:   3'- -UCgCCCUGGCCGa------CCag----CUGG--UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 28524 0.68 0.494849
Target:  5'- cGCGGGACgGGCguccGGgacCGGCCaaugggggagccguGCCCGc -3'
miRNA:   3'- uCGCCCUGgCCGa---CCa--GCUGG--------------UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 139649 0.68 0.497608
Target:  5'- cGCGGGGguCgCGGCgGG-CGcGCCGCCCGa -3'
miRNA:   3'- uCGCCCU--G-GCCGaCCaGC-UGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 141317 0.68 0.497608
Target:  5'- gGGCGGGuCCGGgaUGGUC-ACCGCgUAc -3'
miRNA:   3'- -UCGCCCuGGCCg-ACCAGcUGGUGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.