miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29630 3' -62.9 NC_006151.1 + 142016 0.66 0.612322
Target:  5'- gGGCGGGugUGGCaccacgugGGUgcaucUGACC-CCCu -3'
miRNA:   3'- -UCGCCCugGCCGa-------CCA-----GCUGGuGGGu -5'
29630 3' -62.9 NC_006151.1 + 141317 0.68 0.497608
Target:  5'- gGGCGGGuCCGGgaUGGUC-ACCGCgUAc -3'
miRNA:   3'- -UCGCCCuGGCCg-ACCAGcUGGUGgGU- -5'
29630 3' -62.9 NC_006151.1 + 139649 0.68 0.497608
Target:  5'- cGCGGGGguCgCGGCgGG-CGcGCCGCCCGa -3'
miRNA:   3'- uCGCCCU--G-GCCGaCCaGC-UGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 139604 0.7 0.347031
Target:  5'- gAGCGGcGGCCcguccgggcgcGGCUGGg-GGCCAUCCGg -3'
miRNA:   3'- -UCGCC-CUGG-----------CCGACCagCUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 137738 0.67 0.554093
Target:  5'- cGCGGuGGCCGGCgccgacacGGUCcGCgGCCUg -3'
miRNA:   3'- uCGCC-CUGGCCGa-------CCAGcUGgUGGGu -5'
29630 3' -62.9 NC_006151.1 + 135123 0.73 0.228736
Target:  5'- cGCGGGGCgGGCUGGgcggggacgggcaGACCcaGCCCGg -3'
miRNA:   3'- uCGCCCUGgCCGACCag-----------CUGG--UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 133159 0.66 0.612322
Target:  5'- cGGCGGcGCgGGCgUGGgccUCGGCCACgCGu -3'
miRNA:   3'- -UCGCCcUGgCCG-ACC---AGCUGGUGgGU- -5'
29630 3' -62.9 NC_006151.1 + 132837 0.67 0.544527
Target:  5'- cGCGGGA-CGGCcaccacgGG-CGGCCgGCCCGg -3'
miRNA:   3'- uCGCCCUgGCCGa------CCaGCUGG-UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 130966 0.71 0.318294
Target:  5'- cGCgGGGGCCGGUacccCGGCCGCCCGg -3'
miRNA:   3'- uCG-CCCUGGCCGaccaGCUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 128543 0.74 0.211199
Target:  5'- cGGCGGGcccGCCGGCgcGGU--GCCGCCCAa -3'
miRNA:   3'- -UCGCCC---UGGCCGa-CCAgcUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 127381 0.66 0.583062
Target:  5'- cGCGGGGgUGGCgGGggccgCGGCCgagucgacgggaGCCCGc -3'
miRNA:   3'- uCGCCCUgGCCGaCCa----GCUGG------------UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 127334 0.69 0.409881
Target:  5'- gGGCGGGgguGCUGGUacacgUGGUCGGucUCGCCCu -3'
miRNA:   3'- -UCGCCC---UGGCCG-----ACCAGCU--GGUGGGu -5'
29630 3' -62.9 NC_006151.1 + 127266 0.66 0.612322
Target:  5'- cGCGGuGGCCGGUgaGGUCGAUgACg-- -3'
miRNA:   3'- uCGCC-CUGGCCGa-CCAGCUGgUGggu -5'
29630 3' -62.9 NC_006151.1 + 126386 0.66 0.612322
Target:  5'- cAGCGGGcCCGcGCUGc-UGGCCAgCCGc -3'
miRNA:   3'- -UCGCCCuGGC-CGACcaGCUGGUgGGU- -5'
29630 3' -62.9 NC_006151.1 + 121922 0.69 0.435209
Target:  5'- gAGgGGGACCGcguGCUGGgggcgcUGGCCGCCg- -3'
miRNA:   3'- -UCgCCCUGGC---CGACCa-----GCUGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 121091 0.71 0.332434
Target:  5'- cGGCGGcGCCgGGCUGcaCGACCACUCGc -3'
miRNA:   3'- -UCGCCcUGG-CCGACcaGCUGGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 120743 0.67 0.544527
Target:  5'- cGCGGGAcCCGGCcgcgucauggccUGGgugCGG-CGCCCGc -3'
miRNA:   3'- uCGCCCU-GGCCG------------ACCa--GCUgGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 118877 0.66 0.573366
Target:  5'- cAGCGGcGGCgCGGC-GGcgacgCGGCCGCCg- -3'
miRNA:   3'- -UCGCC-CUG-GCCGaCCa----GCUGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 117261 0.66 0.602546
Target:  5'- aGGCGcGGGCCGcGCg---CGGCCGCCg- -3'
miRNA:   3'- -UCGC-CCUGGC-CGaccaGCUGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 106240 0.67 0.535016
Target:  5'- cGCGGuGGCCGGCgagcCGACgCACCUg -3'
miRNA:   3'- uCGCC-CUGGCCGaccaGCUG-GUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.