miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 3' -62.2 NC_006151.1 + 58651 0.68 0.546044
Target:  5'- gCGCCGGGagggcgcgGCGcagggccgccaUGA-CCGcGCCGUGCg -3'
miRNA:   3'- -GCGGCCCa-------CGC-----------ACUaGGCcCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 91677 0.68 0.546044
Target:  5'- gCGCCGGGUG-GUGcgCgUGGGUgGggugGCg -3'
miRNA:   3'- -GCGGCCCACgCACuaG-GCCCGgCa---CG- -5'
29631 3' -62.2 NC_006151.1 + 17169 0.68 0.546044
Target:  5'- gGUCGGcG-GCGcccagGAUCCacagguggaucgGGGCCGUGCc -3'
miRNA:   3'- gCGGCC-CaCGCa----CUAGG------------CCCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 122676 0.68 0.536563
Target:  5'- gCGCCGaGGUGCGcg--CgGcGGCCGUGg -3'
miRNA:   3'- -GCGGC-CCACGCacuaGgC-CCGGCACg -5'
29631 3' -62.2 NC_006151.1 + 96598 0.68 0.536563
Target:  5'- gCGCCGGGcGCGggcGcgCCGacGUCGUGCc -3'
miRNA:   3'- -GCGGCCCaCGCa--CuaGGCc-CGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 135087 0.68 0.527139
Target:  5'- gGCgGGGgcgGCG-GggCCGGGCgGgcgGCg -3'
miRNA:   3'- gCGgCCCa--CGCaCuaGGCCCGgCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 14637 0.68 0.527139
Target:  5'- cCGUCGGG-GCGgccgGGcucggguccgguUCCGGGUCG-GCg -3'
miRNA:   3'- -GCGGCCCaCGCa---CU------------AGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 137766 0.68 0.517777
Target:  5'- gGCCuGGcgcGCGUGcUCCagcaGGCCGUGCu -3'
miRNA:   3'- gCGGcCCa--CGCACuAGGc---CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 1819 0.68 0.517777
Target:  5'- gCGCCGGGgaggcaaGCGccg-CCGGGCCGa-- -3'
miRNA:   3'- -GCGGCCCa------CGCacuaGGCCCGGCacg -5'
29631 3' -62.2 NC_006151.1 + 3112 0.69 0.490111
Target:  5'- cCGCCGcGGcGCG-GGUCCcaGGCCGgGCg -3'
miRNA:   3'- -GCGGC-CCaCGCaCUAGGc-CCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 77221 0.69 0.463154
Target:  5'- cCGCCGcGUGUGUGcgCCGGGaggcgccccCCG-GCg -3'
miRNA:   3'- -GCGGCcCACGCACuaGGCCC---------GGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 5914 0.69 0.454341
Target:  5'- uGCCGGGgucgGCGgccggGGcCCGGaGCCG-GCc -3'
miRNA:   3'- gCGGCCCa---CGCa----CUaGGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 18750 0.69 0.454341
Target:  5'- cCGCCGGGgccccacgGgGUGcccggggcCCGGGCCGggGCc -3'
miRNA:   3'- -GCGGCCCa-------CgCACua------GGCCCGGCa-CG- -5'
29631 3' -62.2 NC_006151.1 + 74133 0.69 0.454341
Target:  5'- uGCgCGGGUGCagcgGGUgCCGGGggucguCCGUGCc -3'
miRNA:   3'- gCG-GCCCACGca--CUA-GGCCC------GGCACG- -5'
29631 3' -62.2 NC_006151.1 + 76340 0.69 0.450842
Target:  5'- gGCCGGGUGCGgcccgucgcgcgcGAUCaucGGCUGcUGCa -3'
miRNA:   3'- gCGGCCCACGCa------------CUAGgc-CCGGC-ACG- -5'
29631 3' -62.2 NC_006151.1 + 56165 0.7 0.428464
Target:  5'- cCGCCGaGGaccGCGUGcUCuCGcuGGCCGUGCc -3'
miRNA:   3'- -GCGGC-CCa--CGCACuAG-GC--CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 81566 0.7 0.409225
Target:  5'- gGCCGuGGUGCGgagcagGGUCUcgcgcgcgucgccgGGGCCGccgGCg -3'
miRNA:   3'- gCGGC-CCACGCa-----CUAGG--------------CCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 100076 0.7 0.395356
Target:  5'- cCGCCGaGGUGCucgagGcgCCGGcGCCG-GCg -3'
miRNA:   3'- -GCGGC-CCACGca---CuaGGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 82353 0.71 0.363946
Target:  5'- cCGCCGuGGUGUacGUGcgCCGGacGCCGgGCg -3'
miRNA:   3'- -GCGGC-CCACG--CACuaGGCC--CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 133385 0.71 0.363946
Target:  5'- gGCCGGGgcgGCGg---CCGGGgCCGaGCg -3'
miRNA:   3'- gCGGCCCa--CGCacuaGGCCC-GGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.