miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 3' -62.2 NC_006151.1 + 75110 0.66 0.623351
Target:  5'- uGCCGGGcGCcagcagcUGGUCgGcGGCCGgcgGCg -3'
miRNA:   3'- gCGGCCCaCGc------ACUAGgC-CCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 78110 0.66 0.623351
Target:  5'- gGCCGGG-GCGgacgccAUCCugcggcGGGCCGcggGCg -3'
miRNA:   3'- gCGGCCCaCGCac----UAGG------CCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 139614 0.66 0.623351
Target:  5'- cCGuCCGGGcGCGgcugGGggccaUCCGGcGCCG-GCg -3'
miRNA:   3'- -GC-GGCCCaCGCa---CU-----AGGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 49635 0.66 0.620425
Target:  5'- aGUgGGGguggGcCGUGGaggaggucgagcccUCCGGGCCGcGCc -3'
miRNA:   3'- gCGgCCCa---C-GCACU--------------AGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 98356 0.67 0.6136
Target:  5'- cCGCgGGcGUGCGcgGGcUCUGGGCgCGcGCg -3'
miRNA:   3'- -GCGgCC-CACGCa-CU-AGGCCCG-GCaCG- -5'
29631 3' -62.2 NC_006151.1 + 21146 0.67 0.6136
Target:  5'- aCGCCGGuacUGCGgaggcuacgGA-CCGGGCUGcGCu -3'
miRNA:   3'- -GCGGCCc--ACGCa--------CUaGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 5725 0.67 0.603862
Target:  5'- uGCUGGuG-GCGccggGGUCCGaGGCCGcGCc -3'
miRNA:   3'- gCGGCC-CaCGCa---CUAGGC-CCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 113036 0.67 0.594143
Target:  5'- gCGCCGGGUGC-UGcgCgGcGGCgGaGCg -3'
miRNA:   3'- -GCGGCCCACGcACuaGgC-CCGgCaCG- -5'
29631 3' -62.2 NC_006151.1 + 126074 0.67 0.594143
Target:  5'- uGCCacGGGgGcCGUGAUCUcGGCCGUcgGCg -3'
miRNA:   3'- gCGG--CCCaC-GCACUAGGcCCGGCA--CG- -5'
29631 3' -62.2 NC_006151.1 + 81186 0.67 0.594143
Target:  5'- aCGCCGccgaGCGUGuacgCCGGGCCGcaguccggGCg -3'
miRNA:   3'- -GCGGCcca-CGCACua--GGCCCGGCa-------CG- -5'
29631 3' -62.2 NC_006151.1 + 117099 0.67 0.594143
Target:  5'- aCGCCGGccucGUGCGUca-CCaGGCCG-GCg -3'
miRNA:   3'- -GCGGCC----CACGCAcuaGGcCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 8578 0.67 0.58445
Target:  5'- gGgUGGGUGgGUGuga-GGGCCgGUGCg -3'
miRNA:   3'- gCgGCCCACgCACuaggCCCGG-CACG- -5'
29631 3' -62.2 NC_006151.1 + 31558 0.67 0.58445
Target:  5'- gCGCCGcGGUGCGcgaacgUGAUCacggggGGGCgGcGCg -3'
miRNA:   3'- -GCGGC-CCACGC------ACUAGg-----CCCGgCaCG- -5'
29631 3' -62.2 NC_006151.1 + 21949 0.67 0.58445
Target:  5'- cCGCggaCGGGUccaccacaucgGCGUGGUgCGGcGCCG-GCa -3'
miRNA:   3'- -GCG---GCCCA-----------CGCACUAgGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 73047 0.67 0.574787
Target:  5'- gCGCgguggGGGUGCGcggGGUCCGcguGGCUGUGg -3'
miRNA:   3'- -GCGg----CCCACGCa--CUAGGC---CCGGCACg -5'
29631 3' -62.2 NC_006151.1 + 10977 0.67 0.574787
Target:  5'- uGgUGGGUGUcacgGUGGagCGGGCCGgggGCc -3'
miRNA:   3'- gCgGCCCACG----CACUagGCCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 60272 0.67 0.569007
Target:  5'- cCGCCGcacGCGccccguggacUGGuagacggaggccaugUCCGGGCCGUGCg -3'
miRNA:   3'- -GCGGCccaCGC----------ACU---------------AGGCCCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 100483 0.67 0.565162
Target:  5'- gCGCUGGGccUGCaggcgcccGUGuUCCGGacGCUGUGCg -3'
miRNA:   3'- -GCGGCCC--ACG--------CACuAGGCC--CGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 10413 0.67 0.565162
Target:  5'- aGCgGGGUGacgccgcggGUGggCCGaGGCCG-GCg -3'
miRNA:   3'- gCGgCCCACg--------CACuaGGC-CCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 133789 0.68 0.554623
Target:  5'- cCGCgGGGgagGCGUGcagcAUCCGGGugcacguCCGggugGCg -3'
miRNA:   3'- -GCGgCCCa--CGCAC----UAGGCCC-------GGCa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.