miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 3' -62.2 NC_006151.1 + 18750 0.69 0.454341
Target:  5'- cCGCCGGGgccccacgGgGUGcccggggcCCGGGCCGggGCc -3'
miRNA:   3'- -GCGGCCCa-------CgCACua------GGCCCGGCa-CG- -5'
29631 3' -62.2 NC_006151.1 + 20146 0.75 0.217952
Target:  5'- cCGCgGGGgcggcGCGUGGaccgCCGGGCCGcGCc -3'
miRNA:   3'- -GCGgCCCa----CGCACUa---GGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 21146 0.67 0.6136
Target:  5'- aCGCCGGuacUGCGgaggcuacgGA-CCGGGCUGcGCu -3'
miRNA:   3'- -GCGGCCc--ACGCa--------CUaGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 21327 0.66 0.672057
Target:  5'- aCGCCcGGcGCGgcgggGGUCCGcGGCUGgaacgGCu -3'
miRNA:   3'- -GCGGcCCaCGCa----CUAGGC-CCGGCa----CG- -5'
29631 3' -62.2 NC_006151.1 + 21496 0.66 0.662345
Target:  5'- gGCCGGGggGCGcGGgcgucaCCGGGgCGgGCu -3'
miRNA:   3'- gCGGCCCa-CGCaCUa-----GGCCCgGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 21949 0.67 0.58445
Target:  5'- cCGCggaCGGGUccaccacaucgGCGUGGUgCGGcGCCG-GCa -3'
miRNA:   3'- -GCG---GCCCA-----------CGCACUAgGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 31558 0.67 0.58445
Target:  5'- gCGCCGcGGUGCGcgaacgUGAUCacggggGGGCgGcGCg -3'
miRNA:   3'- -GCGGC-CCACGC------ACUAGg-----CCCGgCaCG- -5'
29631 3' -62.2 NC_006151.1 + 34468 0.66 0.662345
Target:  5'- -uCCGGGUccggGCG-GGUCCGGGCuCGa-- -3'
miRNA:   3'- gcGGCCCA----CGCaCUAGGCCCG-GCacg -5'
29631 3' -62.2 NC_006151.1 + 39477 0.72 0.306472
Target:  5'- gGcCCGGGUGcCGcGAgcUCCGcgcGGCCGUGCu -3'
miRNA:   3'- gC-GGCCCAC-GCaCU--AGGC---CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 39977 0.66 0.633108
Target:  5'- cCGCCGcGG-GCGccccgCC-GGCCGUGCu -3'
miRNA:   3'- -GCGGC-CCaCGCacua-GGcCCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 49635 0.66 0.620425
Target:  5'- aGUgGGGguggGcCGUGGaggaggucgagcccUCCGGGCCGcGCc -3'
miRNA:   3'- gCGgCCCa---C-GCACU--------------AGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 51354 0.66 0.652612
Target:  5'- gGCCaGGacCGUGAgcaCCGGcCCGUGCu -3'
miRNA:   3'- gCGGcCCacGCACUa--GGCCcGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 54696 0.66 0.662345
Target:  5'- uCGCCGGcaGCGUG--CUGGGCCaggGCc -3'
miRNA:   3'- -GCGGCCcaCGCACuaGGCCCGGca-CG- -5'
29631 3' -62.2 NC_006151.1 + 56165 0.7 0.428464
Target:  5'- cCGCCGaGGaccGCGUGcUCuCGcuGGCCGUGCc -3'
miRNA:   3'- -GCGGC-CCa--CGCACuAG-GC--CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 56309 0.71 0.363946
Target:  5'- aCGCCGcgcGGUGCcUGAgcCUGGGCCGgugGCu -3'
miRNA:   3'- -GCGGC---CCACGcACUa-GGCCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 58651 0.68 0.546044
Target:  5'- gCGCCGGGagggcgcgGCGcagggccgccaUGA-CCGcGCCGUGCg -3'
miRNA:   3'- -GCGGCCCa-------CGC-----------ACUaGGCcCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 58875 0.73 0.280447
Target:  5'- gCGCCGGGUccguccaggccGUGUaGAUCCcGGCCGcGCa -3'
miRNA:   3'- -GCGGCCCA-----------CGCA-CUAGGcCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 59143 0.66 0.633108
Target:  5'- gCGcCCGcGG-GCG-GGUCCaGGCCG-GCg -3'
miRNA:   3'- -GC-GGC-CCaCGCaCUAGGcCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 60272 0.67 0.569007
Target:  5'- cCGCCGcacGCGccccguggacUGGuagacggaggccaugUCCGGGCCGUGCg -3'
miRNA:   3'- -GCGGCccaCGC----------ACU---------------AGGCCCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 73047 0.67 0.574787
Target:  5'- gCGCgguggGGGUGCGcggGGUCCGcguGGCUGUGg -3'
miRNA:   3'- -GCGg----CCCACGCa--CUAGGC---CCGGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.