miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 3' -62.2 NC_006151.1 + 1819 0.68 0.517777
Target:  5'- gCGCCGGGgaggcaaGCGccg-CCGGGCCGa-- -3'
miRNA:   3'- -GCGGCCCa------CGCacuaGGCCCGGCacg -5'
29631 3' -62.2 NC_006151.1 + 2824 0.66 0.642864
Target:  5'- gGCCGGGUccaggcggacGCGgacguagacgUGGUagucccccacggCCGGGCCGUccGCg -3'
miRNA:   3'- gCGGCCCA----------CGC----------ACUA------------GGCCCGGCA--CG- -5'
29631 3' -62.2 NC_006151.1 + 3112 0.69 0.490111
Target:  5'- cCGCCGcGGcGCG-GGUCCcaGGCCGgGCg -3'
miRNA:   3'- -GCGGC-CCaCGCaCUAGGc-CCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 3717 0.76 0.180317
Target:  5'- gCGCCGcucGG-GCGcugGGUCCGGGCCGgcgGCg -3'
miRNA:   3'- -GCGGC---CCaCGCa--CUAGGCCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 3941 0.74 0.228356
Target:  5'- gGCCGGGcGCGggcuccgcgGGcCCGGGCCGcGCg -3'
miRNA:   3'- gCGGCCCaCGCa--------CUaGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 4220 0.66 0.662345
Target:  5'- gGCCGGG-GCGcGGg-CGGGCgCGgGCa -3'
miRNA:   3'- gCGGCCCaCGCaCUagGCCCG-GCaCG- -5'
29631 3' -62.2 NC_006151.1 + 4314 0.66 0.672057
Target:  5'- uCGCgGGGcacGCGg---CCGGGCUGcGCg -3'
miRNA:   3'- -GCGgCCCa--CGCacuaGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 4609 0.66 0.672057
Target:  5'- gGCCGuGGggcGCGUGGacCCGGcGCUG-GCa -3'
miRNA:   3'- gCGGC-CCa--CGCACUa-GGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 5008 0.66 0.633108
Target:  5'- gCGCgGGGgccggGCG-GGcUCCGGGgCCGggGCc -3'
miRNA:   3'- -GCGgCCCa----CGCaCU-AGGCCC-GGCa-CG- -5'
29631 3' -62.2 NC_006151.1 + 5725 0.67 0.603862
Target:  5'- uGCUGGuG-GCGccggGGUCCGaGGCCGcGCc -3'
miRNA:   3'- gCGGCC-CaCGCa---CUAGGC-CCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 5914 0.69 0.454341
Target:  5'- uGCCGGGgucgGCGgccggGGcCCGGaGCCG-GCc -3'
miRNA:   3'- gCGGCCCa---CGCa----CUaGGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 8223 0.76 0.176039
Target:  5'- gGCCGGGUccccuucccgGCGggGAgggCCGGGCCG-GCg -3'
miRNA:   3'- gCGGCCCA----------CGCa-CUa--GGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 8578 0.67 0.58445
Target:  5'- gGgUGGGUGgGUGuga-GGGCCgGUGCg -3'
miRNA:   3'- gCgGCCCACgCACuaggCCCGG-CACG- -5'
29631 3' -62.2 NC_006151.1 + 9040 0.72 0.327177
Target:  5'- cCGCCGGGgcgccccGCGUGcUCCGGgggcGCCGgccgGCc -3'
miRNA:   3'- -GCGGCCCa------CGCACuAGGCC----CGGCa---CG- -5'
29631 3' -62.2 NC_006151.1 + 10413 0.67 0.565162
Target:  5'- aGCgGGGUGacgccgcggGUGggCCGaGGCCG-GCg -3'
miRNA:   3'- gCGgCCCACg--------CACuaGGC-CCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 10977 0.67 0.574787
Target:  5'- uGgUGGGUGUcacgGUGGagCGGGCCGgggGCc -3'
miRNA:   3'- gCgGCCCACG----CACUagGCCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 11045 0.66 0.652612
Target:  5'- gGCCGGGggcccgGCcUGGaCgCGGGCCacacuGUGCg -3'
miRNA:   3'- gCGGCCCa-----CGcACUaG-GCCCGG-----CACG- -5'
29631 3' -62.2 NC_006151.1 + 14063 0.66 0.642864
Target:  5'- ---gGGGUGCGUGGcggCCcGGCCGacgGCa -3'
miRNA:   3'- gcggCCCACGCACUa--GGcCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 14637 0.68 0.527139
Target:  5'- cCGUCGGG-GCGgccgGGcucggguccgguUCCGGGUCG-GCg -3'
miRNA:   3'- -GCGGCCCaCGCa---CU------------AGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 17169 0.68 0.546044
Target:  5'- gGUCGGcG-GCGcccagGAUCCacagguggaucgGGGCCGUGCc -3'
miRNA:   3'- gCGGCC-CaCGCa----CUAGG------------CCCGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.