miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 3' -62.2 NC_006151.1 + 139614 0.66 0.623351
Target:  5'- cCGuCCGGGcGCGgcugGGggccaUCCGGcGCCG-GCg -3'
miRNA:   3'- -GC-GGCCCaCGCa---CU-----AGGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 137766 0.68 0.517777
Target:  5'- gGCCuGGcgcGCGUGcUCCagcaGGCCGUGCu -3'
miRNA:   3'- gCGGcCCa--CGCACuAGGc---CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 137036 0.66 0.672057
Target:  5'- uGCCGGacGCGUGccccCCGGcGCCGgUGUa -3'
miRNA:   3'- gCGGCCcaCGCACua--GGCC-CGGC-ACG- -5'
29631 3' -62.2 NC_006151.1 + 135087 0.68 0.527139
Target:  5'- gGCgGGGgcgGCG-GggCCGGGCgGgcgGCg -3'
miRNA:   3'- gCGgCCCa--CGCaCuaGGCCCGgCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 133789 0.68 0.554623
Target:  5'- cCGCgGGGgagGCGUGcagcAUCCGGGugcacguCCGggugGCg -3'
miRNA:   3'- -GCGgCCCa--CGCAC----UAGGCCC-------GGCa---CG- -5'
29631 3' -62.2 NC_006151.1 + 133637 0.75 0.212903
Target:  5'- gGCCGGG-GCgGUGGUCCGGGUgCGagagGCg -3'
miRNA:   3'- gCGGCCCaCG-CACUAGGCCCG-GCa---CG- -5'
29631 3' -62.2 NC_006151.1 + 133385 0.71 0.363946
Target:  5'- gGCCGGGgcgGCGg---CCGGGgCCGaGCg -3'
miRNA:   3'- gCGGCCCa--CGCacuaGGCCC-GGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 128808 0.66 0.666233
Target:  5'- aGCgCGGcGcGCGUGGccccguacgcggcgcUCUGGGCCuuGUGCu -3'
miRNA:   3'- gCG-GCC-CaCGCACU---------------AGGCCCGG--CACG- -5'
29631 3' -62.2 NC_006151.1 + 126074 0.67 0.594143
Target:  5'- uGCCacGGGgGcCGUGAUCUcGGCCGUcgGCg -3'
miRNA:   3'- gCGG--CCCaC-GCACUAGGcCCGGCA--CG- -5'
29631 3' -62.2 NC_006151.1 + 122676 0.68 0.536563
Target:  5'- gCGCCGaGGUGCGcg--CgGcGGCCGUGg -3'
miRNA:   3'- -GCGGC-CCACGCacuaGgC-CCGGCACg -5'
29631 3' -62.2 NC_006151.1 + 121156 0.66 0.633108
Target:  5'- gGCCGcuGGUGCagacggccGUGua-CGcGGCCGUGCu -3'
miRNA:   3'- gCGGC--CCACG--------CACuagGC-CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 117191 0.66 0.662345
Target:  5'- cCGCCGGGggGCGUcGUaguaguagaCGGGCgCG-GCg -3'
miRNA:   3'- -GCGGCCCa-CGCAcUAg--------GCCCG-GCaCG- -5'
29631 3' -62.2 NC_006151.1 + 117099 0.67 0.594143
Target:  5'- aCGCCGGccucGUGCGUca-CCaGGCCG-GCg -3'
miRNA:   3'- -GCGGCC----CACGCAcuaGGcCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 113036 0.67 0.594143
Target:  5'- gCGCCGGGUGC-UGcgCgGcGGCgGaGCg -3'
miRNA:   3'- -GCGGCCCACGcACuaGgC-CCGgCaCG- -5'
29631 3' -62.2 NC_006151.1 + 100483 0.67 0.565162
Target:  5'- gCGCUGGGccUGCaggcgcccGUGuUCCGGacGCUGUGCg -3'
miRNA:   3'- -GCGGCCC--ACG--------CACuAGGCC--CGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 100076 0.7 0.395356
Target:  5'- cCGCCGaGGUGCucgagGcgCCGGcGCCG-GCg -3'
miRNA:   3'- -GCGGC-CCACGca---CuaGGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 98356 0.67 0.6136
Target:  5'- cCGCgGGcGUGCGcgGGcUCUGGGCgCGcGCg -3'
miRNA:   3'- -GCGgCC-CACGCa-CU-AGGCCCG-GCaCG- -5'
29631 3' -62.2 NC_006151.1 + 97992 0.66 0.642864
Target:  5'- uGCCGGGcgGCGUGG-CCGcguaGGCgGcGCc -3'
miRNA:   3'- gCGGCCCa-CGCACUaGGC----CCGgCaCG- -5'
29631 3' -62.2 NC_006151.1 + 96598 0.68 0.536563
Target:  5'- gCGCCGGGcGCGggcGcgCCGacGUCGUGCc -3'
miRNA:   3'- -GCGGCCCaCGCa--CuaGGCc-CGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 91677 0.68 0.546044
Target:  5'- gCGCCGGGUG-GUGcgCgUGGGUgGggugGCg -3'
miRNA:   3'- -GCGGCCCACgCACuaG-GCCCGgCa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.