miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 3' -62.2 NC_006151.1 + 8223 0.76 0.176039
Target:  5'- gGCCGGGUccccuucccgGCGggGAgggCCGGGCCG-GCg -3'
miRNA:   3'- gCGGCCCA----------CGCa-CUa--GGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 3717 0.76 0.180317
Target:  5'- gCGCCGcucGG-GCGcugGGUCCGGGCCGgcgGCg -3'
miRNA:   3'- -GCGGC---CCaCGCa--CUAGGCCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 133637 0.75 0.212903
Target:  5'- gGCCGGG-GCgGUGGUCCGGGUgCGagagGCg -3'
miRNA:   3'- gCGGCCCaCG-CACUAGGCCCG-GCa---CG- -5'
29631 3' -62.2 NC_006151.1 + 20146 0.75 0.217952
Target:  5'- cCGCgGGGgcggcGCGUGGaccgCCGGGCCGcGCc -3'
miRNA:   3'- -GCGgCCCa----CGCACUa---GGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 3941 0.74 0.228356
Target:  5'- gGCCGGGcGCGggcuccgcgGGcCCGGGCCGcGCg -3'
miRNA:   3'- gCGGCCCaCGCa--------CUaGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 58875 0.73 0.280447
Target:  5'- gCGCCGGGUccguccaggccGUGUaGAUCCcGGCCGcGCa -3'
miRNA:   3'- -GCGGCCCA-----------CGCA-CUAGGcCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 75399 0.73 0.286784
Target:  5'- gGgCGGGUGCGUGcgcggGUCCGGGaggcCCG-GCg -3'
miRNA:   3'- gCgGCCCACGCAC-----UAGGCCC----GGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 39477 0.72 0.306472
Target:  5'- gGcCCGGGUGcCGcGAgcUCCGcgcGGCCGUGCu -3'
miRNA:   3'- gC-GGCCCAC-GCaCU--AGGC---CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 9040 0.72 0.327177
Target:  5'- cCGCCGGGgcgccccGCGUGcUCCGGgggcGCCGgccgGCc -3'
miRNA:   3'- -GCGGCCCa------CGCACuAGGCC----CGGCa---CG- -5'
29631 3' -62.2 NC_006151.1 + 133385 0.71 0.363946
Target:  5'- gGCCGGGgcgGCGg---CCGGGgCCGaGCg -3'
miRNA:   3'- gCGGCCCa--CGCacuaGGCCC-GGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 82353 0.71 0.363946
Target:  5'- cCGCCGuGGUGUacGUGcgCCGGacGCCGgGCg -3'
miRNA:   3'- -GCGGC-CCACG--CACuaGGCC--CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 56309 0.71 0.363946
Target:  5'- aCGCCGcgcGGUGCcUGAgcCUGGGCCGgugGCu -3'
miRNA:   3'- -GCGGC---CCACGcACUa-GGCCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 100076 0.7 0.395356
Target:  5'- cCGCCGaGGUGCucgagGcgCCGGcGCCG-GCg -3'
miRNA:   3'- -GCGGC-CCACGca---CuaGGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 81566 0.7 0.409225
Target:  5'- gGCCGuGGUGCGgagcagGGUCUcgcgcgcgucgccgGGGCCGccgGCg -3'
miRNA:   3'- gCGGC-CCACGCa-----CUAGG--------------CCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 56165 0.7 0.428464
Target:  5'- cCGCCGaGGaccGCGUGcUCuCGcuGGCCGUGCc -3'
miRNA:   3'- -GCGGC-CCa--CGCACuAG-GC--CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 76340 0.69 0.450842
Target:  5'- gGCCGGGUGCGgcccgucgcgcgcGAUCaucGGCUGcUGCa -3'
miRNA:   3'- gCGGCCCACGCa------------CUAGgc-CCGGC-ACG- -5'
29631 3' -62.2 NC_006151.1 + 5914 0.69 0.454341
Target:  5'- uGCCGGGgucgGCGgccggGGcCCGGaGCCG-GCc -3'
miRNA:   3'- gCGGCCCa---CGCa----CUaGGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 18750 0.69 0.454341
Target:  5'- cCGCCGGGgccccacgGgGUGcccggggcCCGGGCCGggGCc -3'
miRNA:   3'- -GCGGCCCa-------CgCACua------GGCCCGGCa-CG- -5'
29631 3' -62.2 NC_006151.1 + 74133 0.69 0.454341
Target:  5'- uGCgCGGGUGCagcgGGUgCCGGGggucguCCGUGCc -3'
miRNA:   3'- gCG-GCCCACGca--CUA-GGCCC------GGCACG- -5'
29631 3' -62.2 NC_006151.1 + 77221 0.69 0.463154
Target:  5'- cCGCCGcGUGUGUGcgCCGGGaggcgccccCCG-GCg -3'
miRNA:   3'- -GCGGCcCACGCACuaGGCCC---------GGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.