miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 3' -62.2 NC_006151.1 + 3112 0.69 0.490111
Target:  5'- cCGCCGcGGcGCG-GGUCCcaGGCCGgGCg -3'
miRNA:   3'- -GCGGC-CCaCGCaCUAGGc-CCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 1819 0.68 0.517777
Target:  5'- gCGCCGGGgaggcaaGCGccg-CCGGGCCGa-- -3'
miRNA:   3'- -GCGGCCCa------CGCacuaGGCCCGGCacg -5'
29631 3' -62.2 NC_006151.1 + 137766 0.68 0.517777
Target:  5'- gGCCuGGcgcGCGUGcUCCagcaGGCCGUGCu -3'
miRNA:   3'- gCGGcCCa--CGCACuAGGc---CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 135087 0.68 0.527139
Target:  5'- gGCgGGGgcgGCG-GggCCGGGCgGgcgGCg -3'
miRNA:   3'- gCGgCCCa--CGCaCuaGGCCCGgCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 14637 0.68 0.527139
Target:  5'- cCGUCGGG-GCGgccgGGcucggguccgguUCCGGGUCG-GCg -3'
miRNA:   3'- -GCGGCCCaCGCa---CU------------AGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 122676 0.68 0.536563
Target:  5'- gCGCCGaGGUGCGcg--CgGcGGCCGUGg -3'
miRNA:   3'- -GCGGC-CCACGCacuaGgC-CCGGCACg -5'
29631 3' -62.2 NC_006151.1 + 96598 0.68 0.536563
Target:  5'- gCGCCGGGcGCGggcGcgCCGacGUCGUGCc -3'
miRNA:   3'- -GCGGCCCaCGCa--CuaGGCc-CGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 91677 0.68 0.546044
Target:  5'- gCGCCGGGUG-GUGcgCgUGGGUgGggugGCg -3'
miRNA:   3'- -GCGGCCCACgCACuaG-GCCCGgCa---CG- -5'
29631 3' -62.2 NC_006151.1 + 58651 0.68 0.546044
Target:  5'- gCGCCGGGagggcgcgGCGcagggccgccaUGA-CCGcGCCGUGCg -3'
miRNA:   3'- -GCGGCCCa-------CGC-----------ACUaGGCcCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 17169 0.68 0.546044
Target:  5'- gGUCGGcG-GCGcccagGAUCCacagguggaucgGGGCCGUGCc -3'
miRNA:   3'- gCGGCC-CaCGCa----CUAGG------------CCCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 133789 0.68 0.554623
Target:  5'- cCGCgGGGgagGCGUGcagcAUCCGGGugcacguCCGggugGCg -3'
miRNA:   3'- -GCGgCCCa--CGCAC----UAGGCCC-------GGCa---CG- -5'
29631 3' -62.2 NC_006151.1 + 10413 0.67 0.565162
Target:  5'- aGCgGGGUGacgccgcggGUGggCCGaGGCCG-GCg -3'
miRNA:   3'- gCGgCCCACg--------CACuaGGC-CCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 100483 0.67 0.565162
Target:  5'- gCGCUGGGccUGCaggcgcccGUGuUCCGGacGCUGUGCg -3'
miRNA:   3'- -GCGGCCC--ACG--------CACuAGGCC--CGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 60272 0.67 0.569007
Target:  5'- cCGCCGcacGCGccccguggacUGGuagacggaggccaugUCCGGGCCGUGCg -3'
miRNA:   3'- -GCGGCccaCGC----------ACU---------------AGGCCCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 73047 0.67 0.574787
Target:  5'- gCGCgguggGGGUGCGcggGGUCCGcguGGCUGUGg -3'
miRNA:   3'- -GCGg----CCCACGCa--CUAGGC---CCGGCACg -5'
29631 3' -62.2 NC_006151.1 + 10977 0.67 0.574787
Target:  5'- uGgUGGGUGUcacgGUGGagCGGGCCGgggGCc -3'
miRNA:   3'- gCgGCCCACG----CACUagGCCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 8578 0.67 0.58445
Target:  5'- gGgUGGGUGgGUGuga-GGGCCgGUGCg -3'
miRNA:   3'- gCgGCCCACgCACuaggCCCGG-CACG- -5'
29631 3' -62.2 NC_006151.1 + 31558 0.67 0.58445
Target:  5'- gCGCCGcGGUGCGcgaacgUGAUCacggggGGGCgGcGCg -3'
miRNA:   3'- -GCGGC-CCACGC------ACUAGg-----CCCGgCaCG- -5'
29631 3' -62.2 NC_006151.1 + 21949 0.67 0.58445
Target:  5'- cCGCggaCGGGUccaccacaucgGCGUGGUgCGGcGCCG-GCa -3'
miRNA:   3'- -GCG---GCCCA-----------CGCACUAgGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 126074 0.67 0.594143
Target:  5'- uGCCacGGGgGcCGUGAUCUcGGCCGUcgGCg -3'
miRNA:   3'- gCGG--CCCaC-GCACUAGGcCCGGCA--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.