Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29631 | 3' | -62.2 | NC_006151.1 | + | 54696 | 0.66 | 0.662345 |
Target: 5'- uCGCCGGcaGCGUG--CUGGGCCaggGCc -3' miRNA: 3'- -GCGGCCcaCGCACuaGGCCCGGca-CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 21496 | 0.66 | 0.662345 |
Target: 5'- gGCCGGGggGCGcGGgcgucaCCGGGgCGgGCu -3' miRNA: 3'- gCGGCCCa-CGCaCUa-----GGCCCgGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 4220 | 0.66 | 0.662345 |
Target: 5'- gGCCGGG-GCGcGGg-CGGGCgCGgGCa -3' miRNA: 3'- gCGGCCCaCGCaCUagGCCCG-GCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 83382 | 0.66 | 0.652612 |
Target: 5'- gCGCCGcaGGUGCuc-GUCCGGGUCcaGCg -3' miRNA: 3'- -GCGGC--CCACGcacUAGGCCCGGcaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 8578 | 0.67 | 0.58445 |
Target: 5'- gGgUGGGUGgGUGuga-GGGCCgGUGCg -3' miRNA: 3'- gCgGCCCACgCACuaggCCCGG-CACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 73047 | 0.67 | 0.574787 |
Target: 5'- gCGCgguggGGGUGCGcggGGUCCGcguGGCUGUGg -3' miRNA: 3'- -GCGg----CCCACGCa--CUAGGC---CCGGCACg -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 10977 | 0.67 | 0.574787 |
Target: 5'- uGgUGGGUGUcacgGUGGagCGGGCCGgggGCc -3' miRNA: 3'- gCgGCCCACG----CACUagGCCCGGCa--CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 60272 | 0.67 | 0.569007 |
Target: 5'- cCGCCGcacGCGccccguggacUGGuagacggaggccaugUCCGGGCCGUGCg -3' miRNA: 3'- -GCGGCccaCGC----------ACU---------------AGGCCCGGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 100483 | 0.67 | 0.565162 |
Target: 5'- gCGCUGGGccUGCaggcgcccGUGuUCCGGacGCUGUGCg -3' miRNA: 3'- -GCGGCCC--ACG--------CACuAGGCC--CGGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 10413 | 0.67 | 0.565162 |
Target: 5'- aGCgGGGUGacgccgcggGUGggCCGaGGCCG-GCg -3' miRNA: 3'- gCGgCCCACg--------CACuaGGC-CCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 31558 | 0.67 | 0.58445 |
Target: 5'- gCGCCGcGGUGCGcgaacgUGAUCacggggGGGCgGcGCg -3' miRNA: 3'- -GCGGC-CCACGC------ACUAGg-----CCCGgCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 21949 | 0.67 | 0.58445 |
Target: 5'- cCGCggaCGGGUccaccacaucgGCGUGGUgCGGcGCCG-GCa -3' miRNA: 3'- -GCG---GCCCA-----------CGCACUAgGCC-CGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 113036 | 0.67 | 0.594143 |
Target: 5'- gCGCCGGGUGC-UGcgCgGcGGCgGaGCg -3' miRNA: 3'- -GCGGCCCACGcACuaGgC-CCGgCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 126074 | 0.67 | 0.594143 |
Target: 5'- uGCCacGGGgGcCGUGAUCUcGGCCGUcgGCg -3' miRNA: 3'- gCGG--CCCaC-GCACUAGGcCCGGCA--CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 81186 | 0.67 | 0.594143 |
Target: 5'- aCGCCGccgaGCGUGuacgCCGGGCCGcaguccggGCg -3' miRNA: 3'- -GCGGCcca-CGCACua--GGCCCGGCa-------CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 117099 | 0.67 | 0.594143 |
Target: 5'- aCGCCGGccucGUGCGUca-CCaGGCCG-GCg -3' miRNA: 3'- -GCGGCC----CACGCAcuaGGcCCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 5725 | 0.67 | 0.603862 |
Target: 5'- uGCUGGuG-GCGccggGGUCCGaGGCCGcGCc -3' miRNA: 3'- gCGGCC-CaCGCa---CUAGGC-CCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 21146 | 0.67 | 0.6136 |
Target: 5'- aCGCCGGuacUGCGgaggcuacgGA-CCGGGCUGcGCu -3' miRNA: 3'- -GCGGCCc--ACGCa--------CUaGGCCCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 98356 | 0.67 | 0.6136 |
Target: 5'- cCGCgGGcGUGCGcgGGcUCUGGGCgCGcGCg -3' miRNA: 3'- -GCGgCC-CACGCa-CU-AGGCCCG-GCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 58651 | 0.68 | 0.546044 |
Target: 5'- gCGCCGGGagggcgcgGCGcagggccgccaUGA-CCGcGCCGUGCg -3' miRNA: 3'- -GCGGCCCa-------CGC-----------ACUaGGCcCGGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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