miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 5' -53.7 NC_006151.1 + 48581 0.83 0.206325
Target:  5'- -gGCCUGCcgccCGGGGUGCGCcucGUCGUGCc -3'
miRNA:   3'- gaUGGACGu---GCCCUACGCG---UAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 77394 0.75 0.534948
Target:  5'- gUACUuugUGCACGGGG-GCuGCAUCGUGUc -3'
miRNA:   3'- gAUGG---ACGUGCCCUaCG-CGUAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 125280 0.74 0.596872
Target:  5'- -gGCCgucaacgGCACGGGGcaccUGCGCAUCAccacggGCu -3'
miRNA:   3'- gaUGGa------CGUGCCCU----ACGCGUAGUa-----CG- -5'
29631 5' -53.7 NC_006151.1 + 82170 0.73 0.649275
Target:  5'- -aGCCgaGCGcCGGGG-GCGCgAUCAUGCg -3'
miRNA:   3'- gaUGGa-CGU-GCCCUaCGCG-UAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 101282 0.73 0.659747
Target:  5'- uCUACgaggGCGCGGGcgGCGCcgCGcUGCa -3'
miRNA:   3'- -GAUGga--CGUGCCCuaCGCGuaGU-ACG- -5'
29631 5' -53.7 NC_006151.1 + 114311 0.73 0.659747
Target:  5'- aCUACgUGCugcgcgACGGGGgccUGCGCGaCGUGCg -3'
miRNA:   3'- -GAUGgACG------UGCCCU---ACGCGUaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 96599 0.72 0.721762
Target:  5'- -cGCCggGCGCGGGc-GCGCcgacGUCGUGCc -3'
miRNA:   3'- gaUGGa-CGUGCCCuaCGCG----UAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 99352 0.71 0.731872
Target:  5'- -cGgCUGCACGGcGGUcgucgGCgGCGUCGUGCa -3'
miRNA:   3'- gaUgGACGUGCC-CUA-----CG-CGUAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 75147 0.71 0.741891
Target:  5'- -gGCCcaGCGCGGGcgcacGgGCAUCAUGCc -3'
miRNA:   3'- gaUGGa-CGUGCCCua---CgCGUAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 91672 0.71 0.751809
Target:  5'- -cACCUGCGcCGGGugGUGCGCGUgGguggggugGCg -3'
miRNA:   3'- gaUGGACGU-GCCC--UACGCGUAgUa-------CG- -5'
29631 5' -53.7 NC_006151.1 + 70164 0.7 0.780861
Target:  5'- -cACgaGCGCGGGcgcgaaGCGCGUCAucUGCu -3'
miRNA:   3'- gaUGgaCGUGCCCua----CGCGUAGU--ACG- -5'
29631 5' -53.7 NC_006151.1 + 60053 0.7 0.799543
Target:  5'- gUGCUUGaacuugaaGCGGGAgaagagGCGCAUCccGCg -3'
miRNA:   3'- gAUGGACg-------UGCCCUa-----CGCGUAGuaCG- -5'
29631 5' -53.7 NC_006151.1 + 85134 0.7 0.808651
Target:  5'- gUGCCUGCACcuGGUGCaCcgCGUGCg -3'
miRNA:   3'- gAUGGACGUGccCUACGcGuaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 31614 0.7 0.808651
Target:  5'- -cGCCUGgGCgGGGAUGCcGCG-CcgGCa -3'
miRNA:   3'- gaUGGACgUG-CCCUACG-CGUaGuaCG- -5'
29631 5' -53.7 NC_006151.1 + 114445 0.7 0.808651
Target:  5'- -cGCCUGCuCGGGGccUGCGCcggccaccgcAUCGUcGCg -3'
miRNA:   3'- gaUGGACGuGCCCU--ACGCG----------UAGUA-CG- -5'
29631 5' -53.7 NC_006151.1 + 139974 0.69 0.834929
Target:  5'- -cACCccGgACGGGcgGCGCGUCAcGUg -3'
miRNA:   3'- gaUGGa-CgUGCCCuaCGCGUAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 131118 0.69 0.834929
Target:  5'- -gGCCgcgGCGCGGGAggccgcgGCGCcgCG-GCc -3'
miRNA:   3'- gaUGGa--CGUGCCCUa------CGCGuaGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 123842 0.69 0.851493
Target:  5'- gCUGCagCUGCGCGGGgcGC-CGUCGcGCu -3'
miRNA:   3'- -GAUG--GACGUGCCCuaCGcGUAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 99006 0.69 0.866456
Target:  5'- -cGCCgcGCACGGccgucgaGGUGCGCGUCuccGCg -3'
miRNA:   3'- gaUGGa-CGUGCC-------CUACGCGUAGua-CG- -5'
29631 5' -53.7 NC_006151.1 + 3449 0.69 0.867222
Target:  5'- -cGCCgucggGCGCGGGGUGCuCGggCAUGg -3'
miRNA:   3'- gaUGGa----CGUGCCCUACGcGUa-GUACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.