miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 5' -53.7 NC_006151.1 + 3266 0.67 0.915011
Target:  5'- -cGCCgcggcGCGCGGcGAUGUGCGcCAggGCg -3'
miRNA:   3'- gaUGGa----CGUGCC-CUACGCGUaGUa-CG- -5'
29631 5' -53.7 NC_006151.1 + 3449 0.69 0.867222
Target:  5'- -cGCCgucggGCGCGGGGUGCuCGggCAUGg -3'
miRNA:   3'- gaUGGa----CGUGCCCUACGcGUa-GUACg -5'
29631 5' -53.7 NC_006151.1 + 4220 0.68 0.902563
Target:  5'- -gGCCgggGCGCGGGcggGCGCGg---GCa -3'
miRNA:   3'- gaUGGa--CGUGCCCua-CGCGUaguaCG- -5'
29631 5' -53.7 NC_006151.1 + 18696 0.66 0.946354
Target:  5'- -----cGCGCGGGcgGCGCcggcGUCGUGa -3'
miRNA:   3'- gauggaCGUGCCCuaCGCG----UAGUACg -5'
29631 5' -53.7 NC_006151.1 + 20987 0.66 0.958691
Target:  5'- -cGCCggGCACGaGGAcgGCGCugccggcgaCGUGCa -3'
miRNA:   3'- gaUGGa-CGUGC-CCUa-CGCGua-------GUACG- -5'
29631 5' -53.7 NC_006151.1 + 26363 0.67 0.920862
Target:  5'- -gGCC-GCGuCGGGgcGCGCGUCccccgGCg -3'
miRNA:   3'- gaUGGaCGU-GCCCuaCGCGUAGua---CG- -5'
29631 5' -53.7 NC_006151.1 + 27026 0.66 0.950708
Target:  5'- cCUGCCaGCAgGGGGccgagggGCGCuggcgCGUGUa -3'
miRNA:   3'- -GAUGGaCGUgCCCUa------CGCGua---GUACG- -5'
29631 5' -53.7 NC_006151.1 + 31433 0.67 0.926462
Target:  5'- -----gGgACGGGGUGCGCGcgCGUGUg -3'
miRNA:   3'- gauggaCgUGCCCUACGCGUa-GUACG- -5'
29631 5' -53.7 NC_006151.1 + 31614 0.7 0.808651
Target:  5'- -cGCCUGgGCgGGGAUGCcGCG-CcgGCa -3'
miRNA:   3'- gaUGGACgUG-CCCUACG-CGUaGuaCG- -5'
29631 5' -53.7 NC_006151.1 + 39328 0.68 0.887038
Target:  5'- gUACCUcugcucgcggcucgGCGCGGcGcgGCGCcggcucAUCGUGCu -3'
miRNA:   3'- gAUGGA--------------CGUGCC-CuaCGCG------UAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 39569 0.67 0.926462
Target:  5'- -cGCCUGCAcccCGGGGccgagccgcUGCGCcUC-UGCc -3'
miRNA:   3'- gaUGGACGU---GCCCU---------ACGCGuAGuACG- -5'
29631 5' -53.7 NC_006151.1 + 42654 0.66 0.958691
Target:  5'- -gGCCggGCAUccccgccgcgGGGAUGUGUG-CGUGCg -3'
miRNA:   3'- gaUGGa-CGUG----------CCCUACGCGUaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 45186 0.67 0.935405
Target:  5'- gUGCCcGCcaccacggacggcgACGGGGUGCGCcgCGcucGCg -3'
miRNA:   3'- gAUGGaCG--------------UGCCCUACGCGuaGUa--CG- -5'
29631 5' -53.7 NC_006151.1 + 48581 0.83 0.206325
Target:  5'- -gGCCUGCcgccCGGGGUGCGCcucGUCGUGCc -3'
miRNA:   3'- gaUGGACGu---GCCCUACGCG---UAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 52597 0.67 0.908911
Target:  5'- --cCCUGCGCGuGGAcgaagGCGuCGUCGcGCa -3'
miRNA:   3'- gauGGACGUGC-CCUa----CGC-GUAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 53336 0.67 0.920862
Target:  5'- -gACgaGCACGGGgcGCGCG-CGcGCc -3'
miRNA:   3'- gaUGgaCGUGCCCuaCGCGUaGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 54674 0.68 0.902563
Target:  5'- -gACCUgGC-CGGGcaccUGCGCGUCGccgGCa -3'
miRNA:   3'- gaUGGA-CGuGCCCu---ACGCGUAGUa--CG- -5'
29631 5' -53.7 NC_006151.1 + 54842 0.68 0.89597
Target:  5'- -gGCgaGCGCGGGGaGUGCcUgGUGCu -3'
miRNA:   3'- gaUGgaCGUGCCCUaCGCGuAgUACG- -5'
29631 5' -53.7 NC_006151.1 + 54919 0.68 0.882062
Target:  5'- -cGCgUGCACGGcGAgGUGCuggCGUGCc -3'
miRNA:   3'- gaUGgACGUGCC-CUaCGCGua-GUACG- -5'
29631 5' -53.7 NC_006151.1 + 59355 0.66 0.950708
Target:  5'- -gGCCgcgcGCACGGGGcgccGCGCggccGUCGUcGCg -3'
miRNA:   3'- gaUGGa---CGUGCCCUa---CGCG----UAGUA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.