miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 5' -53.7 NC_006151.1 + 139974 0.69 0.834929
Target:  5'- -cACCccGgACGGGcgGCGCGUCAcGUg -3'
miRNA:   3'- gaUGGa-CgUGCCCuaCGCGUAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 139361 0.68 0.89597
Target:  5'- uCUGCCUGCugGuaGGggGCGUGU--UGCu -3'
miRNA:   3'- -GAUGGACGugC--CCuaCGCGUAguACG- -5'
29631 5' -53.7 NC_006151.1 + 137298 0.67 0.920862
Target:  5'- -gGCCaUGCGCGGGuuccgccGCGCG--GUGCu -3'
miRNA:   3'- gaUGG-ACGUGCCCua-----CGCGUagUACG- -5'
29631 5' -53.7 NC_006151.1 + 133667 0.66 0.943624
Target:  5'- gCUGCCgGCGCGGcGgcGCGCccccgaggcggucucGUCGgcgGCg -3'
miRNA:   3'- -GAUGGaCGUGCC-CuaCGCG---------------UAGUa--CG- -5'
29631 5' -53.7 NC_006151.1 + 131118 0.69 0.834929
Target:  5'- -gGCCgcgGCGCGGGAggccgcgGCGCcgCG-GCc -3'
miRNA:   3'- gaUGGa--CGUGCCCUa------CGCGuaGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 127800 0.66 0.946354
Target:  5'- -cGCCgcGCGCGGGG-GCGCgagGUCcuUGCg -3'
miRNA:   3'- gaUGGa-CGUGCCCUaCGCG---UAGu-ACG- -5'
29631 5' -53.7 NC_006151.1 + 125280 0.74 0.596872
Target:  5'- -gGCCgucaacgGCACGGGGcaccUGCGCAUCAccacggGCu -3'
miRNA:   3'- gaUGGa------CGUGCCCU----ACGCGUAGUa-----CG- -5'
29631 5' -53.7 NC_006151.1 + 123842 0.69 0.851493
Target:  5'- gCUGCagCUGCGCGGGgcGC-CGUCGcGCu -3'
miRNA:   3'- -GAUG--GACGUGCCCuaCGcGUAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 114445 0.7 0.808651
Target:  5'- -cGCCUGCuCGGGGccUGCGCcggccaccgcAUCGUcGCg -3'
miRNA:   3'- gaUGGACGuGCCCU--ACGCG----------UAGUA-CG- -5'
29631 5' -53.7 NC_006151.1 + 114311 0.73 0.659747
Target:  5'- aCUACgUGCugcgcgACGGGGgccUGCGCGaCGUGCg -3'
miRNA:   3'- -GAUGgACG------UGCCCU---ACGCGUaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 112798 0.66 0.946354
Target:  5'- -cACUUuCGCGGGc-GCGCGUCGcUGCa -3'
miRNA:   3'- gaUGGAcGUGCCCuaCGCGUAGU-ACG- -5'
29631 5' -53.7 NC_006151.1 + 106646 0.66 0.950708
Target:  5'- -cGCCUGgACGccGcgGCGCA-CGUGCg -3'
miRNA:   3'- gaUGGACgUGCc-CuaCGCGUaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 105522 0.68 0.874756
Target:  5'- -gACC-GCAUGGcGgcGCGCAUCggGCc -3'
miRNA:   3'- gaUGGaCGUGCC-CuaCGCGUAGuaCG- -5'
29631 5' -53.7 NC_006151.1 + 102697 0.69 0.867222
Target:  5'- -cGCCcgGCGCGGGcgGCGCGgcCGaGCc -3'
miRNA:   3'- gaUGGa-CGUGCCCuaCGCGUa-GUaCG- -5'
29631 5' -53.7 NC_006151.1 + 101282 0.73 0.659747
Target:  5'- uCUACgaggGCGCGGGcgGCGCcgCGcUGCa -3'
miRNA:   3'- -GAUGga--CGUGCCCuaCGCGuaGU-ACG- -5'
29631 5' -53.7 NC_006151.1 + 101234 0.66 0.958691
Target:  5'- -gGCCcgGCGgGGGcauGUGCGcCAUCA-GCg -3'
miRNA:   3'- gaUGGa-CGUgCCC---UACGC-GUAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 100051 0.68 0.902563
Target:  5'- -gAgCUGCACGGGGucgUGCGCG-CG-GCc -3'
miRNA:   3'- gaUgGACGUGCCCU---ACGCGUaGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 99352 0.71 0.731872
Target:  5'- -cGgCUGCACGGcGGUcgucgGCgGCGUCGUGCa -3'
miRNA:   3'- gaUgGACGUGCC-CUA-----CG-CGUAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 99040 0.68 0.89597
Target:  5'- -gGCCcucgcGCACGGGGacGCGUA-CGUGCg -3'
miRNA:   3'- gaUGGa----CGUGCCCUa-CGCGUaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 99006 0.69 0.866456
Target:  5'- -cGCCgcGCACGGccgucgaGGUGCGCGUCuccGCg -3'
miRNA:   3'- gaUGGa-CGUGCC-------CUACGCGUAGua-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.