miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 5' -53.7 NC_006151.1 + 60053 0.7 0.799543
Target:  5'- gUGCUUGaacuugaaGCGGGAgaagagGCGCAUCccGCg -3'
miRNA:   3'- gAUGGACg-------UGCCCUa-----CGCGUAGuaCG- -5'
29631 5' -53.7 NC_006151.1 + 67718 0.66 0.946354
Target:  5'- -cGCCacagGCACGGcGcgGCGCA-CAgGCa -3'
miRNA:   3'- gaUGGa---CGUGCC-CuaCGCGUaGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 70164 0.7 0.780861
Target:  5'- -cACgaGCGCGGGcgcgaaGCGCGUCAucUGCu -3'
miRNA:   3'- gaUGgaCGUGCCCua----CGCGUAGU--ACG- -5'
29631 5' -53.7 NC_006151.1 + 72099 0.66 0.941755
Target:  5'- -gGCCUGgGCGaGcgGCaGCGUCAUGg -3'
miRNA:   3'- gaUGGACgUGCcCuaCG-CGUAGUACg -5'
29631 5' -53.7 NC_006151.1 + 72279 0.67 0.93181
Target:  5'- -gGCCaGCAUGcGGUGCGgCGUCAcGCg -3'
miRNA:   3'- gaUGGaCGUGCcCUACGC-GUAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 75147 0.71 0.741891
Target:  5'- -gGCCcaGCGCGGGcgcacGgGCAUCAUGCc -3'
miRNA:   3'- gaUGGa-CGUGCCCua---CgCGUAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 77394 0.75 0.534948
Target:  5'- gUACUuugUGCACGGGG-GCuGCAUCGUGUc -3'
miRNA:   3'- gAUGG---ACGUGCCCUaCG-CGUAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 77463 0.67 0.936908
Target:  5'- -cACgCUGCGCGGGAacGCGCccgggaaccgcGUCGUcGCc -3'
miRNA:   3'- gaUG-GACGUGCCCUa-CGCG-----------UAGUA-CG- -5'
29631 5' -53.7 NC_006151.1 + 82170 0.73 0.649275
Target:  5'- -aGCCgaGCGcCGGGG-GCGCgAUCAUGCg -3'
miRNA:   3'- gaUGGa-CGU-GCCCUaCGCG-UAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 83685 0.68 0.874756
Target:  5'- gCUGCCguucUGCuucCGGGucUGCGCAUCGUa- -3'
miRNA:   3'- -GAUGG----ACGu--GCCCu-ACGCGUAGUAcg -5'
29631 5' -53.7 NC_006151.1 + 85134 0.7 0.808651
Target:  5'- gUGCCUGCACcuGGUGCaCcgCGUGCg -3'
miRNA:   3'- gAUGGACGUGccCUACGcGuaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 85366 0.67 0.936908
Target:  5'- -cGCCUGCGCGuGGuccccgGCGCgaacGUCG-GCg -3'
miRNA:   3'- gaUGGACGUGC-CCua----CGCG----UAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 89458 0.68 0.89597
Target:  5'- -cGCCUGCACcagcaGGGcc-CGCGUCAcgUGCg -3'
miRNA:   3'- gaUGGACGUG-----CCCuacGCGUAGU--ACG- -5'
29631 5' -53.7 NC_006151.1 + 91672 0.71 0.751809
Target:  5'- -cACCUGCGcCGGGugGUGCGCGUgGguggggugGCg -3'
miRNA:   3'- gaUGGACGU-GCCC--UACGCGUAgUa-------CG- -5'
29631 5' -53.7 NC_006151.1 + 91798 0.68 0.902563
Target:  5'- -gGCUuauaUGCGCGGGAUGCcccgccccGCcaCAUGCg -3'
miRNA:   3'- gaUGG----ACGUGCCCUACG--------CGuaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 92050 0.66 0.958691
Target:  5'- gCUGCCUGCuGCGccuGcUGCGCAUgcUGCa -3'
miRNA:   3'- -GAUGGACG-UGCc--CuACGCGUAguACG- -5'
29631 5' -53.7 NC_006151.1 + 94879 0.68 0.874756
Target:  5'- -gACCUGCgACGaGGAcacggUGgGCAUCA-GCg -3'
miRNA:   3'- gaUGGACG-UGC-CCU-----ACgCGUAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 95239 0.67 0.915011
Target:  5'- -gACCgagGCGCccgucGGGuaguucccgAUGCGCAUCAUGg -3'
miRNA:   3'- gaUGGa--CGUG-----CCC---------UACGCGUAGUACg -5'
29631 5' -53.7 NC_006151.1 + 95895 0.68 0.902563
Target:  5'- -cGCCUugaGCACGGccauGAUGCcGCG-CGUGCa -3'
miRNA:   3'- gaUGGA---CGUGCC----CUACG-CGUaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 96599 0.72 0.721762
Target:  5'- -cGCCggGCGCGGGc-GCGCcgacGUCGUGCc -3'
miRNA:   3'- gaUGGa-CGUGCCCuaCGCG----UAGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.