miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 5' -53.7 NC_006151.1 + 39569 0.67 0.926462
Target:  5'- -cGCCUGCAcccCGGGGccgagccgcUGCGCcUC-UGCc -3'
miRNA:   3'- gaUGGACGU---GCCCU---------ACGCGuAGuACG- -5'
29631 5' -53.7 NC_006151.1 + 137298 0.67 0.920862
Target:  5'- -gGCCaUGCGCGGGuuccgccGCGCG--GUGCu -3'
miRNA:   3'- gaUGG-ACGUGCCCua-----CGCGUagUACG- -5'
29631 5' -53.7 NC_006151.1 + 97203 0.67 0.920862
Target:  5'- gUGCCgaggcGCACGuaGGcgGCGUA-CAUGCa -3'
miRNA:   3'- gAUGGa----CGUGC--CCuaCGCGUaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 26363 0.67 0.920862
Target:  5'- -gGCC-GCGuCGGGgcGCGCGUCccccgGCg -3'
miRNA:   3'- gaUGGaCGU-GCCCuaCGCGUAGua---CG- -5'
29631 5' -53.7 NC_006151.1 + 53336 0.67 0.920862
Target:  5'- -gACgaGCACGGGgcGCGCG-CGcGCc -3'
miRNA:   3'- gaUGgaCGUGCCCuaCGCGUaGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 95239 0.67 0.915011
Target:  5'- -gACCgagGCGCccgucGGGuaguucccgAUGCGCAUCAUGg -3'
miRNA:   3'- gaUGGa--CGUG-----CCC---------UACGCGUAGUACg -5'
29631 5' -53.7 NC_006151.1 + 3266 0.67 0.915011
Target:  5'- -cGCCgcggcGCGCGGcGAUGUGCGcCAggGCg -3'
miRNA:   3'- gaUGGa----CGUGCC-CUACGCGUaGUa-CG- -5'
29631 5' -53.7 NC_006151.1 + 52597 0.67 0.908911
Target:  5'- --cCCUGCGCGuGGAcgaagGCGuCGUCGcGCa -3'
miRNA:   3'- gauGGACGUGC-CCUa----CGC-GUAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 54674 0.68 0.902563
Target:  5'- -gACCUgGC-CGGGcaccUGCGCGUCGccgGCa -3'
miRNA:   3'- gaUGGA-CGuGCCCu---ACGCGUAGUa--CG- -5'
29631 5' -53.7 NC_006151.1 + 91798 0.68 0.902563
Target:  5'- -gGCUuauaUGCGCGGGAUGCcccgccccGCcaCAUGCg -3'
miRNA:   3'- gaUGG----ACGUGCCCUACG--------CGuaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 95895 0.68 0.902563
Target:  5'- -cGCCUugaGCACGGccauGAUGCcGCG-CGUGCa -3'
miRNA:   3'- gaUGGA---CGUGCC----CUACG-CGUaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 100051 0.68 0.902563
Target:  5'- -gAgCUGCACGGGGucgUGCGCG-CG-GCc -3'
miRNA:   3'- gaUgGACGUGCCCU---ACGCGUaGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 4220 0.68 0.902563
Target:  5'- -gGCCgggGCGCGGGcggGCGCGg---GCa -3'
miRNA:   3'- gaUGGa--CGUGCCCua-CGCGUaguaCG- -5'
29631 5' -53.7 NC_006151.1 + 54842 0.68 0.89597
Target:  5'- -gGCgaGCGCGGGGaGUGCcUgGUGCu -3'
miRNA:   3'- gaUGgaCGUGCCCUaCGCGuAgUACG- -5'
29631 5' -53.7 NC_006151.1 + 89458 0.68 0.89597
Target:  5'- -cGCCUGCACcagcaGGGcc-CGCGUCAcgUGCg -3'
miRNA:   3'- gaUGGACGUG-----CCCuacGCGUAGU--ACG- -5'
29631 5' -53.7 NC_006151.1 + 99040 0.68 0.89597
Target:  5'- -gGCCcucgcGCACGGGGacGCGUA-CGUGCg -3'
miRNA:   3'- gaUGGa----CGUGCCCUa-CGCGUaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 139361 0.68 0.89597
Target:  5'- uCUGCCUGCugGuaGGggGCGUGU--UGCu -3'
miRNA:   3'- -GAUGGACGugC--CCuaCGCGUAguACG- -5'
29631 5' -53.7 NC_006151.1 + 39328 0.68 0.887038
Target:  5'- gUACCUcugcucgcggcucgGCGCGGcGcgGCGCcggcucAUCGUGCu -3'
miRNA:   3'- gAUGGA--------------CGUGCC-CuaCGCG------UAGUACG- -5'
29631 5' -53.7 NC_006151.1 + 54919 0.68 0.882062
Target:  5'- -cGCgUGCACGGcGAgGUGCuggCGUGCc -3'
miRNA:   3'- gaUGgACGUGCC-CUaCGCGua-GUACG- -5'
29631 5' -53.7 NC_006151.1 + 83685 0.68 0.874756
Target:  5'- gCUGCCguucUGCuucCGGGucUGCGCAUCGUa- -3'
miRNA:   3'- -GAUGG----ACGu--GCCCu-ACGCGUAGUAcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.