miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 3' -63.1 NC_006151.1 + 142293 0.66 0.577944
Target:  5'- gACCGGCcGGGACGAGa--GCGAg--- -3'
miRNA:   3'- -UGGCCGcCCCUGCUCgggCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 141702 0.69 0.412995
Target:  5'- gGCUGGCGGcGGACGcgguGCCCGgGGcgUUAAu -3'
miRNA:   3'- -UGGCCGCC-CCUGCu---CGGGCgCU--AGUU- -5'
29632 3' -63.1 NC_006151.1 + 141649 0.67 0.483138
Target:  5'- gGCgCGGCGGGGccccGCGGGCUCGUuGUgGAg -3'
miRNA:   3'- -UG-GCCGCCCC----UGCUCGGGCGcUAgUU- -5'
29632 3' -63.1 NC_006151.1 + 141376 0.7 0.349492
Target:  5'- --aGGaCGGGGGCGGGCCC-CGggCAAa -3'
miRNA:   3'- uggCC-GCCCCUGCUCGGGcGCuaGUU- -5'
29632 3' -63.1 NC_006151.1 + 137105 0.67 0.529767
Target:  5'- uGCUGGcCGGGGACGccugggGGCgCGCGAc--- -3'
miRNA:   3'- -UGGCC-GCCCCUGC------UCGgGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 136983 0.68 0.42142
Target:  5'- cGCCGcGcCGGGcGGCGGGCgCGCGcgCAc -3'
miRNA:   3'- -UGGC-C-GCCC-CUGCUCGgGCGCuaGUu -5'
29632 3' -63.1 NC_006151.1 + 135132 0.69 0.380358
Target:  5'- gGCUgGGCGGGGACGggcagacccAGCCCgGCGggCGc -3'
miRNA:   3'- -UGG-CCGCCCCUGC---------UCGGG-CGCuaGUu -5'
29632 3' -63.1 NC_006151.1 + 133669 0.69 0.372473
Target:  5'- uGCCGGCGcGGcGGCGcGCCCccgagGCGGUCu- -3'
miRNA:   3'- -UGGCCGC-CC-CUGCuCGGG-----CGCUAGuu -5'
29632 3' -63.1 NC_006151.1 + 131733 0.69 0.380358
Target:  5'- --aGGCGGGGugGCGGGCCCggGCGAggCGAc -3'
miRNA:   3'- uggCCGCCCC--UGCUCGGG--CGCUa-GUU- -5'
29632 3' -63.1 NC_006151.1 + 130911 0.66 0.568214
Target:  5'- cGCCGucguCGGuGGcCGGGCCCGCGGgggCGGg -3'
miRNA:   3'- -UGGCc---GCC-CCuGCUCGGGCGCUa--GUU- -5'
29632 3' -63.1 NC_006151.1 + 129792 0.69 0.39646
Target:  5'- cGCCGGCGuGGGcccgcAUGAgGCCCGUGAgcgCGGa -3'
miRNA:   3'- -UGGCCGC-CCC-----UGCU-CGGGCGCUa--GUU- -5'
29632 3' -63.1 NC_006151.1 + 129461 0.72 0.267897
Target:  5'- gGCCGuGgGcGGGACGAGCCCGUccaGGUCc- -3'
miRNA:   3'- -UGGC-CgC-CCCUGCUCGGGCG---CUAGuu -5'
29632 3' -63.1 NC_006151.1 + 127858 0.67 0.510897
Target:  5'- cGCCGGaGGGGGCGccGCCCGCcgccGUCc- -3'
miRNA:   3'- -UGGCCgCCCCUGCu-CGGGCGc---UAGuu -5'
29632 3' -63.1 NC_006151.1 + 127365 0.66 0.55756
Target:  5'- cGCCcugGGCGGGGACcgcggggguggcgGGGgCCGCGGcCGAg -3'
miRNA:   3'- -UGG---CCGCCCCUG-------------CUCgGGCGCUaGUU- -5'
29632 3' -63.1 NC_006151.1 + 125256 0.73 0.238725
Target:  5'- cCCGGCGGGGACGcccgagccGCCgGCcGUCAAc -3'
miRNA:   3'- uGGCCGCCCCUGCu-------CGGgCGcUAGUU- -5'
29632 3' -63.1 NC_006151.1 + 122973 0.66 0.572101
Target:  5'- cGCCGGCgacGGGGGCGucggcgacgaagacgGGCCCgGCGcgCc- -3'
miRNA:   3'- -UGGCCG---CCCCUGC---------------UCGGG-CGCuaGuu -5'
29632 3' -63.1 NC_006151.1 + 122687 0.66 0.58771
Target:  5'- cGCgCGGCGGccGugGAGCUCGCGcUCu- -3'
miRNA:   3'- -UG-GCCGCCc-CugCUCGGGCGCuAGuu -5'
29632 3' -63.1 NC_006151.1 + 121415 0.69 0.388354
Target:  5'- cGCgGGCGGGGACGucgcggGGCUCGCGc---- -3'
miRNA:   3'- -UGgCCGCCCCUGC------UCGGGCGCuaguu -5'
29632 3' -63.1 NC_006151.1 + 119753 0.67 0.501567
Target:  5'- gACCGGCucuGGcGGACGuGGCCgGCGcgCGc -3'
miRNA:   3'- -UGGCCG---CC-CCUGC-UCGGgCGCuaGUu -5'
29632 3' -63.1 NC_006151.1 + 116736 0.72 0.261241
Target:  5'- cACC-GCGGGGucguccgagucgcACGAGCCCGCGAg--- -3'
miRNA:   3'- -UGGcCGCCCC-------------UGCUCGGGCGCUaguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.