miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 3' -63.1 NC_006151.1 + 659 0.73 0.233218
Target:  5'- gGCgCGGCcGGGGCGGGCuCCGCgGAUCGc -3'
miRNA:   3'- -UG-GCCGcCCCUGCUCG-GGCG-CUAGUu -5'
29632 3' -63.1 NC_006151.1 + 2281 0.78 0.098048
Target:  5'- gGCCGGCGGGGcgcccgcggcggcgACGGcGCCCGgGGUCAGc -3'
miRNA:   3'- -UGGCCGCCCC--------------UGCU-CGGGCgCUAGUU- -5'
29632 3' -63.1 NC_006151.1 + 2450 0.69 0.39646
Target:  5'- gGCCGcaGCGGGGcgcCGAGCCCccaGCGGUUg- -3'
miRNA:   3'- -UGGC--CGCCCCu--GCUCGGG---CGCUAGuu -5'
29632 3' -63.1 NC_006151.1 + 2482 0.66 0.58771
Target:  5'- gGCCGcGCGGugcccgaaGGCGGcGCCCGCG-UCAAa -3'
miRNA:   3'- -UGGC-CGCCc-------CUGCU-CGGGCGCuAGUU- -5'
29632 3' -63.1 NC_006151.1 + 3425 0.66 0.558526
Target:  5'- cGCCGGCcGGGACGcGGCggaagCCGCcGUCGGg -3'
miRNA:   3'- -UGGCCGcCCCUGC-UCG-----GGCGcUAGUU- -5'
29632 3' -63.1 NC_006151.1 + 3740 0.69 0.388354
Target:  5'- gGCCGGCGGcGGGgGAGCUgGCGuagcCGGa -3'
miRNA:   3'- -UGGCCGCC-CCUgCUCGGgCGCua--GUU- -5'
29632 3' -63.1 NC_006151.1 + 3830 0.66 0.539297
Target:  5'- uGCUGGCGGGGcuggaGGGCCCG-GAg--- -3'
miRNA:   3'- -UGGCCGCCCCug---CUCGGGCgCUaguu -5'
29632 3' -63.1 NC_006151.1 + 4922 0.69 0.388354
Target:  5'- cCCGaGCGGGGugagcaGCG-GCCCGuCGGUCGg -3'
miRNA:   3'- uGGC-CGCCCC------UGCuCGGGC-GCUAGUu -5'
29632 3' -63.1 NC_006151.1 + 5101 0.68 0.438577
Target:  5'- cGCCGGCGGaGACGguggcGGCCCggcGCGggCGAg -3'
miRNA:   3'- -UGGCCGCCcCUGC-----UCGGG---CGCuaGUU- -5'
29632 3' -63.1 NC_006151.1 + 5369 0.68 0.447303
Target:  5'- cGCCGGCGGGGcugucucuGCGGGggcgcCCCGCcGUCc- -3'
miRNA:   3'- -UGGCCGCCCC--------UGCUC-----GGGCGcUAGuu -5'
29632 3' -63.1 NC_006151.1 + 7687 0.66 0.568214
Target:  5'- aGCCGGuCGGaGaGACGAGCggaaCCGCcGUCGGa -3'
miRNA:   3'- -UGGCC-GCC-C-CUGCUCG----GGCGcUAGUU- -5'
29632 3' -63.1 NC_006151.1 + 8237 0.74 0.192933
Target:  5'- cCCGGCGGGGAgggcCGGGCCgGCGcgCc- -3'
miRNA:   3'- uGGCCGCCCCU----GCUCGGgCGCuaGuu -5'
29632 3' -63.1 NC_006151.1 + 10665 0.67 0.529767
Target:  5'- -gCGGCGGGGGagcgcgGAGCgcgccgcccccCCGUGAUCAc -3'
miRNA:   3'- ugGCCGCCCCUg-----CUCG-----------GGCGCUAGUu -5'
29632 3' -63.1 NC_006151.1 + 13405 0.73 0.217339
Target:  5'- cGCCGGCcaaugGGGGAgcCGGGCCCGCG-UCc- -3'
miRNA:   3'- -UGGCCG-----CCCCU--GCUCGGGCGCuAGuu -5'
29632 3' -63.1 NC_006151.1 + 13965 0.74 0.197614
Target:  5'- cGCCGGCcaugGGGGAgcCGGGCCCGCG-UCc- -3'
miRNA:   3'- -UGGCCG----CCCCU--GCUCGGGCGCuAGuu -5'
29632 3' -63.1 NC_006151.1 + 20119 0.72 0.255896
Target:  5'- cCCGGCgacggggcugGGGGGCGGGCgCCGCGGgggCGg -3'
miRNA:   3'- uGGCCG----------CCCCUGCUCG-GGCGCUa--GUu -5'
29632 3' -63.1 NC_006151.1 + 20720 0.67 0.510897
Target:  5'- uCCGGCGGGGcCGGGCgCGaGA-CGAa -3'
miRNA:   3'- uGGCCGCCCCuGCUCGgGCgCUaGUU- -5'
29632 3' -63.1 NC_006151.1 + 21543 0.7 0.339852
Target:  5'- gGCCGGggcCGGGGccugggccucgGCGAGCCCGCcgagggccgcgcggGGUCGAu -3'
miRNA:   3'- -UGGCC---GCCCC-----------UGCUCGGGCG--------------CUAGUU- -5'
29632 3' -63.1 NC_006151.1 + 23045 0.67 0.520298
Target:  5'- aGCgGGCGGccgcGGCGAGCCCaCGAccUCGAu -3'
miRNA:   3'- -UGgCCGCCc---CUGCUCGGGcGCU--AGUU- -5'
29632 3' -63.1 NC_006151.1 + 23422 0.67 0.489552
Target:  5'- cGCCGGCcguGGGGGCGAugggugggagggugGCCCcggggcggGUGAUCGu -3'
miRNA:   3'- -UGGCCG---CCCCUGCU--------------CGGG--------CGCUAGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.