miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 3' -63.1 NC_006151.1 + 24627 0.66 0.548886
Target:  5'- cCCGuGCaGGuaGGCGAGCCCGCGGa--- -3'
miRNA:   3'- uGGC-CGcCC--CUGCUCGGGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 26923 0.74 0.197614
Target:  5'- gACCGGCGGGGA-GAGgaCgCGCGGUCGu -3'
miRNA:   3'- -UGGCCGCCCCUgCUCg-G-GCGCUAGUu -5'
29632 3' -63.1 NC_006151.1 + 28501 0.7 0.357039
Target:  5'- cCCGGgaaGGGGGCGguccGGCCCGCGGg--- -3'
miRNA:   3'- uGGCCg--CCCCUGC----UCGGGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 28542 0.68 0.429948
Target:  5'- gACCGGCcaaugGGGGAgcCGuGCCCGCG-UCc- -3'
miRNA:   3'- -UGGCCG-----CCCCU--GCuCGGGCGCuAGuu -5'
29632 3' -63.1 NC_006151.1 + 28785 0.71 0.306624
Target:  5'- gUCGGCGGGG-CGguccGGCCCGCGGg--- -3'
miRNA:   3'- uGGCCGCCCCuGC----UCGGGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 29208 0.69 0.380358
Target:  5'- gGCgCGGCGGGGugGGGaugggucaCCGCcgGGUCGg -3'
miRNA:   3'- -UG-GCCGCCCCugCUCg-------GGCG--CUAGUu -5'
29632 3' -63.1 NC_006151.1 + 31745 0.68 0.447303
Target:  5'- cCCGcGcCGGGGACGcGCCUGCGG-CGg -3'
miRNA:   3'- uGGC-C-GCCCCUGCuCGGGCGCUaGUu -5'
29632 3' -63.1 NC_006151.1 + 31961 0.66 0.58771
Target:  5'- cGCCGGggaCGcGGGACGuGCCCGCc----- -3'
miRNA:   3'- -UGGCC---GC-CCCUGCuCGGGCGcuaguu -5'
29632 3' -63.1 NC_006151.1 + 32850 0.73 0.216826
Target:  5'- gGCCGGCGGGGAUGGGgaagaaggcccgaCCCGCGc---- -3'
miRNA:   3'- -UGGCCGCCCCUGCUC-------------GGGCGCuaguu -5'
29632 3' -63.1 NC_006151.1 + 33922 0.69 0.380358
Target:  5'- uCCGGCGGGcGGauCGAgGCCCGCGcgCc- -3'
miRNA:   3'- uGGCCGCCC-CU--GCU-CGGGCGCuaGuu -5'
29632 3' -63.1 NC_006151.1 + 35547 0.67 0.510897
Target:  5'- gGCCGGCcgucGGGGA--AGUCCGCGG-CGAa -3'
miRNA:   3'- -UGGCCG----CCCCUgcUCGGGCGCUaGUU- -5'
29632 3' -63.1 NC_006151.1 + 38303 0.66 0.577944
Target:  5'- cGCCGcGCGGcc-CGGGCCCGCGGa--- -3'
miRNA:   3'- -UGGC-CGCCccuGCUCGGGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 40041 0.7 0.360089
Target:  5'- cGCCGcCGGGGGCGccguggagacccaccGGCCCGCGGg--- -3'
miRNA:   3'- -UGGCcGCCCCUGC---------------UCGGGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 41867 0.67 0.474046
Target:  5'- --gGGgGGGGAgGAGCCCgGCG-UCAc -3'
miRNA:   3'- uggCCgCCCCUgCUCGGG-CGCuAGUu -5'
29632 3' -63.1 NC_006151.1 + 46055 0.72 0.274067
Target:  5'- aGCCGGUaGGGGgGGGCuUCGCGGUCAu -3'
miRNA:   3'- -UGGCCGcCCCUgCUCG-GGCGCUAGUu -5'
29632 3' -63.1 NC_006151.1 + 46719 0.66 0.558526
Target:  5'- uGCCucgggGGCcGGGGCcGGCCCGgGGUCGg -3'
miRNA:   3'- -UGG-----CCGcCCCUGcUCGGGCgCUAGUu -5'
29632 3' -63.1 NC_006151.1 + 49841 0.71 0.31348
Target:  5'- -aCGGCGGcGGCGGGCCCGCGc---- -3'
miRNA:   3'- ugGCCGCCcCUGCUCGGGCGCuaguu -5'
29632 3' -63.1 NC_006151.1 + 50372 0.86 0.027623
Target:  5'- cGCCGGCGGGGGCGAGacgcgggcCCCGCGGUCc- -3'
miRNA:   3'- -UGGCCGCCCCUGCUC--------GGGCGCUAGuu -5'
29632 3' -63.1 NC_006151.1 + 50441 0.7 0.320452
Target:  5'- cGCCGGCGGccuGGGCaccGCCCGCGggCGc -3'
miRNA:   3'- -UGGCCGCC---CCUGcu-CGGGCGCuaGUu -5'
29632 3' -63.1 NC_006151.1 + 52385 0.66 0.567243
Target:  5'- gGCCcGCGGGGGCGGcgggcgccgccgcGCCCGagaaGUCAAa -3'
miRNA:   3'- -UGGcCGCCCCUGCU-------------CGGGCgc--UAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.