Results 21 - 40 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 2482 | 0.66 | 0.58771 |
Target: 5'- gGCCGcGCGGugcccgaaGGCGGcGCCCGCG-UCAAa -3' miRNA: 3'- -UGGC-CGCCc-------CUGCU-CGGGCGCuAGUU- -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 76810 | 0.66 | 0.586732 |
Target: 5'- cCCGGCGaGGGCGggcgcguaguggcGGCCCGCG-UCc- -3' miRNA: 3'- uGGCCGCcCCUGC-------------UCGGGCGCuAGuu -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 61046 | 0.66 | 0.577944 |
Target: 5'- aGCCGGCGGuaGGGCcGGCCCGUcAUg-- -3' miRNA: 3'- -UGGCCGCC--CCUGcUCGGGCGcUAguu -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 38303 | 0.66 | 0.577944 |
Target: 5'- cGCCGcGCGGcc-CGGGCCCGCGGa--- -3' miRNA: 3'- -UGGC-CGCCccuGCUCGGGCGCUaguu -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 102883 | 0.66 | 0.576969 |
Target: 5'- cGCC-GCGGuGGCGGGCCUGCGccgccucGUCGAc -3' miRNA: 3'- -UGGcCGCCcCUGCUCGGGCGC-------UAGUU- -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 78695 | 0.66 | 0.576969 |
Target: 5'- cGCCGGcCGGGGccucgucgccgcgACGGcGCCCGUGGg--- -3' miRNA: 3'- -UGGCC-GCCCC-------------UGCU-CGGGCGCUaguu -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 72864 | 0.66 | 0.577944 |
Target: 5'- gUCGGCGaGGcGGCGGcGCCCGUG-UCGg -3' miRNA: 3'- uGGCCGC-CC-CUGCU-CGGGCGCuAGUu -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 84814 | 0.66 | 0.577944 |
Target: 5'- gACC-GCGGccgcGGACGGGgCCGCGAggugCAGa -3' miRNA: 3'- -UGGcCGCC----CCUGCUCgGGCGCUa---GUU- -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 142293 | 0.66 | 0.577944 |
Target: 5'- gACCGGCcGGGACGAGa--GCGAg--- -3' miRNA: 3'- -UGGCCGcCCCUGCUCgggCGCUaguu -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 65802 | 0.67 | 0.501567 |
Target: 5'- cCCGGCGcGGACGuGCC-GCGGUgGAu -3' miRNA: 3'- uGGCCGCcCCUGCuCGGgCGCUAgUU- -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 82151 | 0.67 | 0.501567 |
Target: 5'- cCCGGCGGcuccaGGucCGAGCCgagcgccgggggCGCGAUCAu -3' miRNA: 3'- uGGCCGCC-----CCu-GCUCGG------------GCGCUAGUu -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 20720 | 0.67 | 0.510897 |
Target: 5'- uCCGGCGGGGcCGGGCgCGaGA-CGAa -3' miRNA: 3'- uGGCCGCCCCuGCUCGgGCgCUaGUU- -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 35547 | 0.67 | 0.510897 |
Target: 5'- gGCCGGCcgucGGGGA--AGUCCGCGG-CGAa -3' miRNA: 3'- -UGGCCG----CCCCUgcUCGGGCGCUaGUU- -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 127858 | 0.67 | 0.510897 |
Target: 5'- cGCCGGaGGGGGCGccGCCCGCcgccGUCc- -3' miRNA: 3'- -UGGCCgCCCCUGCu-CGGGCGc---UAGuu -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 23045 | 0.67 | 0.520298 |
Target: 5'- aGCgGGCGGccgcGGCGAGCCCaCGAccUCGAu -3' miRNA: 3'- -UGgCCGCCc---CUGCUCGGGcGCU--AGUU- -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 57148 | 0.67 | 0.528817 |
Target: 5'- cACgCGGCGGGGGCGAGggcguccCCCGgCGcggcccagaaGUCGGg -3' miRNA: 3'- -UG-GCCGCCCCUGCUC-------GGGC-GC----------UAGUU- -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 94575 | 0.67 | 0.528817 |
Target: 5'- gACUGGCugugguccacaaaGGGGGCGcGGUCCGCGcacauGUCGAu -3' miRNA: 3'- -UGGCCG-------------CCCCUGC-UCGGGCGC-----UAGUU- -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 137105 | 0.67 | 0.529767 |
Target: 5'- uGCUGGcCGGGGACGccugggGGCgCGCGAc--- -3' miRNA: 3'- -UGGCC-GCCCCUGC------UCGgGCGCUaguu -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 10665 | 0.67 | 0.529767 |
Target: 5'- -gCGGCGGGGGagcgcgGAGCgcgccgcccccCCGUGAUCAc -3' miRNA: 3'- ugGCCGCCCCUg-----CUCG-----------GGCGCUAGUu -5' |
|||||||
29632 | 3' | -63.1 | NC_006151.1 | + | 119753 | 0.67 | 0.501567 |
Target: 5'- gACCGGCucuGGcGGACGuGGCCgGCGcgCGc -3' miRNA: 3'- -UGGCCG---CC-CCUGC-UCGGgCGCuaGUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home