miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 3' -63.1 NC_006151.1 + 49841 0.71 0.31348
Target:  5'- -aCGGCGGcGGCGGGCCCGCGc---- -3'
miRNA:   3'- ugGCCGCCcCUGCUCGGGCGCuaguu -5'
29632 3' -63.1 NC_006151.1 + 50441 0.7 0.320452
Target:  5'- cGCCGGCGGccuGGGCaccGCCCGCGggCGc -3'
miRNA:   3'- -UGGCCGCC---CCUGcu-CGGGCGCuaGUu -5'
29632 3' -63.1 NC_006151.1 + 21543 0.7 0.339852
Target:  5'- gGCCGGggcCGGGGccugggccucgGCGAGCCCGCcgagggccgcgcggGGUCGAu -3'
miRNA:   3'- -UGGCC---GCCCC-----------UGCUCGGGCG--------------CUAGUU- -5'
29632 3' -63.1 NC_006151.1 + 141376 0.7 0.349492
Target:  5'- --aGGaCGGGGGCGGGCCC-CGggCAAa -3'
miRNA:   3'- uggCC-GCCCCUGCUCGGGcGCuaGUU- -5'
29632 3' -63.1 NC_006151.1 + 28501 0.7 0.357039
Target:  5'- cCCGGgaaGGGGGCGguccGGCCCGCGGg--- -3'
miRNA:   3'- uGGCCg--CCCCUGC----UCGGGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 113898 0.7 0.357039
Target:  5'- gGCCGcGCGGcgcaaGACGcugacgcgcgcGGCCCGCGAUCGc -3'
miRNA:   3'- -UGGC-CGCCc----CUGC-----------UCGGGCGCUAGUu -5'
29632 3' -63.1 NC_006151.1 + 40041 0.7 0.360089
Target:  5'- cGCCGcCGGGGGCGccguggagacccaccGGCCCGCGGg--- -3'
miRNA:   3'- -UGGCcGCCCCUGC---------------UCGGGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 89595 0.7 0.364699
Target:  5'- cGCCGGCGGccgugaGGACGAuGgCCGCGAg--- -3'
miRNA:   3'- -UGGCCGCC------CCUGCU-CgGGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 112617 0.69 0.370129
Target:  5'- cGCUGGCGcuGGACGAGCCCuGCcgcgugugccgcacGAUCGAc -3'
miRNA:   3'- -UGGCCGCc-CCUGCUCGGG-CG--------------CUAGUU- -5'
29632 3' -63.1 NC_006151.1 + 90693 0.69 0.37169
Target:  5'- -gCGGCGGGGGCGGcggacgcGCCCGCcccgCAGg -3'
miRNA:   3'- ugGCCGCCCCUGCU-------CGGGCGcua-GUU- -5'
29632 3' -63.1 NC_006151.1 + 133669 0.69 0.372473
Target:  5'- uGCCGGCGcGGcGGCGcGCCCccgagGCGGUCu- -3'
miRNA:   3'- -UGGCCGC-CC-CUGCuCGGG-----CGCUAGuu -5'
29632 3' -63.1 NC_006151.1 + 131733 0.69 0.380358
Target:  5'- --aGGCGGGGugGCGGGCCCggGCGAggCGAc -3'
miRNA:   3'- uggCCGCCCC--UGCUCGGG--CGCUa-GUU- -5'
29632 3' -63.1 NC_006151.1 + 135132 0.69 0.380358
Target:  5'- gGCUgGGCGGGGACGggcagacccAGCCCgGCGggCGc -3'
miRNA:   3'- -UGG-CCGCCCCUGC---------UCGGG-CGCuaGUu -5'
29632 3' -63.1 NC_006151.1 + 33922 0.69 0.380358
Target:  5'- uCCGGCGGGcGGauCGAgGCCCGCGcgCc- -3'
miRNA:   3'- uGGCCGCCC-CU--GCU-CGGGCGCuaGuu -5'
29632 3' -63.1 NC_006151.1 + 29208 0.69 0.380358
Target:  5'- gGCgCGGCGGGGugGGGaugggucaCCGCcgGGUCGg -3'
miRNA:   3'- -UG-GCCGCCCCugCUCg-------GGCG--CUAGUu -5'
29632 3' -63.1 NC_006151.1 + 75388 0.69 0.388354
Target:  5'- uGCaCGGCGcGGGGCGGGUgCGUGcgCGGg -3'
miRNA:   3'- -UG-GCCGC-CCCUGCUCGgGCGCuaGUU- -5'
29632 3' -63.1 NC_006151.1 + 121415 0.69 0.388354
Target:  5'- cGCgGGCGGGGACGucgcggGGCUCGCGc---- -3'
miRNA:   3'- -UGgCCGCCCCUGC------UCGGGCGCuaguu -5'
29632 3' -63.1 NC_006151.1 + 3740 0.69 0.388354
Target:  5'- gGCCGGCGGcGGGgGAGCUgGCGuagcCGGa -3'
miRNA:   3'- -UGGCCGCC-CCUgCUCGGgCGCua--GUU- -5'
29632 3' -63.1 NC_006151.1 + 4922 0.69 0.388354
Target:  5'- cCCGaGCGGGGugagcaGCG-GCCCGuCGGUCGg -3'
miRNA:   3'- uGGC-CGCCCC------UGCuCGGGC-GCUAGUu -5'
29632 3' -63.1 NC_006151.1 + 113097 0.69 0.388354
Target:  5'- cGCCGccacCGGGGGCGGGgCCGCGGa--- -3'
miRNA:   3'- -UGGCc---GCCCCUGCUCgGGCGCUaguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.