miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 3' -63.1 NC_006151.1 + 46719 0.66 0.558526
Target:  5'- uGCCucgggGGCcGGGGCcGGCCCGgGGUCGg -3'
miRNA:   3'- -UGG-----CCGcCCCUGcUCGGGCgCUAGUu -5'
29632 3' -63.1 NC_006151.1 + 3425 0.66 0.558526
Target:  5'- cGCCGGCcGGGACGcGGCggaagCCGCcGUCGGg -3'
miRNA:   3'- -UGGCCGcCCCUGC-UCG-----GGCGcUAGUU- -5'
29632 3' -63.1 NC_006151.1 + 127365 0.66 0.55756
Target:  5'- cGCCcugGGCGGGGACcgcggggguggcgGGGgCCGCGGcCGAg -3'
miRNA:   3'- -UGG---CCGCCCCUG-------------CUCgGGCGCUaGUU- -5'
29632 3' -63.1 NC_006151.1 + 24627 0.66 0.548886
Target:  5'- cCCGuGCaGGuaGGCGAGCCCGCGGa--- -3'
miRNA:   3'- uGGC-CGcCC--CUGCUCGGGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 93567 0.66 0.548886
Target:  5'- cGCC-GCGGGGGCGGGCgCGCc----- -3'
miRNA:   3'- -UGGcCGCCCCUGCUCGgGCGcuaguu -5'
29632 3' -63.1 NC_006151.1 + 68663 0.66 0.548886
Target:  5'- gGCCGGCGGG-----GCCCGCG-UCAc -3'
miRNA:   3'- -UGGCCGCCCcugcuCGGGCGCuAGUu -5'
29632 3' -63.1 NC_006151.1 + 61281 0.66 0.548886
Target:  5'- uAUCGuGCGGGGACGgaAGCUCGaCGggCGc -3'
miRNA:   3'- -UGGC-CGCCCCUGC--UCGGGC-GCuaGUu -5'
29632 3' -63.1 NC_006151.1 + 85158 0.66 0.539297
Target:  5'- -gCGGCaGGGGGCcGGCgCCGCGggCGc -3'
miRNA:   3'- ugGCCG-CCCCUGcUCG-GGCGCuaGUu -5'
29632 3' -63.1 NC_006151.1 + 3830 0.66 0.539297
Target:  5'- uGCUGGCGGGGcuggaGGGCCCG-GAg--- -3'
miRNA:   3'- -UGGCCGCCCCug---CUCGGGCgCUaguu -5'
29632 3' -63.1 NC_006151.1 + 137105 0.67 0.529767
Target:  5'- uGCUGGcCGGGGACGccugggGGCgCGCGAc--- -3'
miRNA:   3'- -UGGCC-GCCCCUGC------UCGgGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 10665 0.67 0.529767
Target:  5'- -gCGGCGGGGGagcgcgGAGCgcgccgcccccCCGUGAUCAc -3'
miRNA:   3'- ugGCCGCCCCUg-----CUCG-----------GGCGCUAGUu -5'
29632 3' -63.1 NC_006151.1 + 56936 0.67 0.529767
Target:  5'- -gCGGCGGGG-CGucGCCgGCGcUCAGc -3'
miRNA:   3'- ugGCCGCCCCuGCu-CGGgCGCuAGUU- -5'
29632 3' -63.1 NC_006151.1 + 94575 0.67 0.528817
Target:  5'- gACUGGCugugguccacaaaGGGGGCGcGGUCCGCGcacauGUCGAu -3'
miRNA:   3'- -UGGCCG-------------CCCCUGC-UCGGGCGC-----UAGUU- -5'
29632 3' -63.1 NC_006151.1 + 57148 0.67 0.528817
Target:  5'- cACgCGGCGGGGGCGAGggcguccCCCGgCGcggcccagaaGUCGGg -3'
miRNA:   3'- -UG-GCCGCCCCUGCUC-------GGGC-GC----------UAGUU- -5'
29632 3' -63.1 NC_006151.1 + 23045 0.67 0.520298
Target:  5'- aGCgGGCGGccgcGGCGAGCCCaCGAccUCGAu -3'
miRNA:   3'- -UGgCCGCCc---CUGCUCGGGcGCU--AGUU- -5'
29632 3' -63.1 NC_006151.1 + 20720 0.67 0.510897
Target:  5'- uCCGGCGGGGcCGGGCgCGaGA-CGAa -3'
miRNA:   3'- uGGCCGCCCCuGCUCGgGCgCUaGUU- -5'
29632 3' -63.1 NC_006151.1 + 35547 0.67 0.510897
Target:  5'- gGCCGGCcgucGGGGA--AGUCCGCGG-CGAa -3'
miRNA:   3'- -UGGCCG----CCCCUgcUCGGGCGCUaGUU- -5'
29632 3' -63.1 NC_006151.1 + 127858 0.67 0.510897
Target:  5'- cGCCGGaGGGGGCGccGCCCGCcgccGUCc- -3'
miRNA:   3'- -UGGCCgCCCCUGCu-CGGGCGc---UAGuu -5'
29632 3' -63.1 NC_006151.1 + 65802 0.67 0.501567
Target:  5'- cCCGGCGcGGACGuGCC-GCGGUgGAu -3'
miRNA:   3'- uGGCCGCcCCUGCuCGGgCGCUAgUU- -5'
29632 3' -63.1 NC_006151.1 + 119753 0.67 0.501567
Target:  5'- gACCGGCucuGGcGGACGuGGCCgGCGcgCGc -3'
miRNA:   3'- -UGGCCG---CC-CCUGC-UCGGgCGCuaGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.