miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 3' -63.1 NC_006151.1 + 65802 0.67 0.501567
Target:  5'- cCCGGCGcGGACGuGCC-GCGGUgGAu -3'
miRNA:   3'- uGGCCGCcCCUGCuCGGgCGCUAgUU- -5'
29632 3' -63.1 NC_006151.1 + 82151 0.67 0.501567
Target:  5'- cCCGGCGGcuccaGGucCGAGCCgagcgccgggggCGCGAUCAu -3'
miRNA:   3'- uGGCCGCC-----CCu-GCUCGG------------GCGCUAGUu -5'
29632 3' -63.1 NC_006151.1 + 97286 0.67 0.492313
Target:  5'- cUCGGCGGcGGGCGuguugagccGGCCCGuCGggCAGc -3'
miRNA:   3'- uGGCCGCC-CCUGC---------UCGGGC-GCuaGUU- -5'
29632 3' -63.1 NC_006151.1 + 23422 0.67 0.489552
Target:  5'- cGCCGGCcguGGGGGCGAugggugggagggugGCCCcggggcggGUGAUCGu -3'
miRNA:   3'- -UGGCCG---CCCCUGCU--------------CGGG--------CGCUAGUu -5'
29632 3' -63.1 NC_006151.1 + 141649 0.67 0.483138
Target:  5'- gGCgCGGCGGGGccccGCGGGCUCGUuGUgGAg -3'
miRNA:   3'- -UG-GCCGCCCC----UGCUCGGGCGcUAgUU- -5'
29632 3' -63.1 NC_006151.1 + 58118 0.67 0.483138
Target:  5'- gACgGGCGGGGucGCGucGCCCGCGc---- -3'
miRNA:   3'- -UGgCCGCCCC--UGCu-CGGGCGCuaguu -5'
29632 3' -63.1 NC_006151.1 + 41867 0.67 0.474046
Target:  5'- --gGGgGGGGAgGAGCCCgGCG-UCAc -3'
miRNA:   3'- uggCCgCCCCUgCUCGGG-CGCuAGUu -5'
29632 3' -63.1 NC_006151.1 + 81278 0.67 0.474046
Target:  5'- cUCGGCGGGGAucuCGGGCgCgGCGcgCGc -3'
miRNA:   3'- uGGCCGCCCCU---GCUCG-GgCGCuaGUu -5'
29632 3' -63.1 NC_006151.1 + 112030 0.68 0.465041
Target:  5'- cCCGGCGGGaGCugGGGCCgGCGggCGGg -3'
miRNA:   3'- uGGCCGCCCcUG--CUCGGgCGCuaGUU- -5'
29632 3' -63.1 NC_006151.1 + 63507 0.68 0.465041
Target:  5'- gGCCaGGUGGGGGCGcGCgggGCGGUCGGg -3'
miRNA:   3'- -UGG-CCGCCCCUGCuCGgg-CGCUAGUU- -5'
29632 3' -63.1 NC_006151.1 + 64122 0.68 0.456126
Target:  5'- cCCGGCGGuGGCGcGCCCGUcucGUCGAa -3'
miRNA:   3'- uGGCCGCCcCUGCuCGGGCGc--UAGUU- -5'
29632 3' -63.1 NC_006151.1 + 31745 0.68 0.447303
Target:  5'- cCCGcGcCGGGGACGcGCCUGCGG-CGg -3'
miRNA:   3'- uGGC-C-GCCCCUGCuCGGGCGCUaGUu -5'
29632 3' -63.1 NC_006151.1 + 5369 0.68 0.447303
Target:  5'- cGCCGGCGGGGcugucucuGCGGGggcgcCCCGCcGUCc- -3'
miRNA:   3'- -UGGCCGCCCC--------UGCUC-----GGGCGcUAGuu -5'
29632 3' -63.1 NC_006151.1 + 116115 0.68 0.444675
Target:  5'- gGCgCGGCGcuugucGGGcagcacgaagccgcGCGAGCCCGCGAgcuUCAGc -3'
miRNA:   3'- -UG-GCCGC------CCC--------------UGCUCGGGCGCU---AGUU- -5'
29632 3' -63.1 NC_006151.1 + 5101 0.68 0.438577
Target:  5'- cGCCGGCGGaGACGguggcGGCCCggcGCGggCGAg -3'
miRNA:   3'- -UGGCCGCCcCUGC-----UCGGG---CGCuaGUU- -5'
29632 3' -63.1 NC_006151.1 + 104020 0.68 0.429948
Target:  5'- cGCgCGGCGGaGGugGAGCgCGCGcagCGc -3'
miRNA:   3'- -UG-GCCGCC-CCugCUCGgGCGCua-GUu -5'
29632 3' -63.1 NC_006151.1 + 28542 0.68 0.429948
Target:  5'- gACCGGCcaaugGGGGAgcCGuGCCCGCG-UCc- -3'
miRNA:   3'- -UGGCCG-----CCCCU--GCuCGGGCGCuAGuu -5'
29632 3' -63.1 NC_006151.1 + 103426 0.68 0.42142
Target:  5'- cCCGGCGGuGGACcuGCUCGCGcacAUCAc -3'
miRNA:   3'- uGGCCGCC-CCUGcuCGGGCGC---UAGUu -5'
29632 3' -63.1 NC_006151.1 + 136983 0.68 0.42142
Target:  5'- cGCCGcGcCGGGcGGCGGGCgCGCGcgCAc -3'
miRNA:   3'- -UGGC-C-GCCC-CUGCUCGgGCGCuaGUu -5'
29632 3' -63.1 NC_006151.1 + 141702 0.69 0.412995
Target:  5'- gGCUGGCGGcGGACGcgguGCCCGgGGcgUUAAu -3'
miRNA:   3'- -UGGCCGCC-CCUGCu---CGGGCgCU--AGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.