miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29633 3' -60.8 NC_006151.1 + 129323 0.67 0.651755
Target:  5'- --gGCagaGGCggguuagcgGCCCCGGGGcggccggcGCGCCg -3'
miRNA:   3'- ucaUGaugCCGa--------CGGGGCCCC--------UGCGG- -5'
29633 3' -60.8 NC_006151.1 + 46699 0.67 0.651755
Target:  5'- gGGUccuCUGCGcaGCauggUGCCUCGGGGGCcgggGCCg -3'
miRNA:   3'- -UCAu--GAUGC--CG----ACGGGGCCCCUG----CGG- -5'
29633 3' -60.8 NC_006151.1 + 104542 0.67 0.651755
Target:  5'- gAGUACgagGCcgagcuGGCcGCCCUGGGcGCGCg -3'
miRNA:   3'- -UCAUGa--UG------CCGaCGGGGCCCcUGCGg -5'
29633 3' -60.8 NC_006151.1 + 123906 0.67 0.651755
Target:  5'- cGUGCggcGCGGCgGCCgugaCGcGGGcCGCCu -3'
miRNA:   3'- uCAUGa--UGCCGaCGGg---GC-CCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 49149 0.67 0.650766
Target:  5'- --cGCccACGGCUGCcuggaggCCUGGGcGCGCCg -3'
miRNA:   3'- ucaUGa-UGCCGACG-------GGGCCCcUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 123841 0.67 0.641859
Target:  5'- --cGCUGCaGCUGCg-CGGGG-CGCCg -3'
miRNA:   3'- ucaUGAUGcCGACGggGCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 8186 0.67 0.641859
Target:  5'- -------gGGCcggGaCCCCGGGGGCGCUc -3'
miRNA:   3'- ucaugaugCCGa--C-GGGGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 40232 0.67 0.641859
Target:  5'- ---cCUACcuGCUGCUCCGcugagcGGGGCGCCc -3'
miRNA:   3'- ucauGAUGc-CGACGGGGC------CCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 56491 0.67 0.641859
Target:  5'- -cUGCUGuCGGCcccccggGCCCCGcccgucguGGACGCCc -3'
miRNA:   3'- ucAUGAU-GCCGa------CGGGGCc-------CCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 103635 0.67 0.641859
Target:  5'- cGGUG--GCGGCgGCgCUGGcGGACGCg -3'
miRNA:   3'- -UCAUgaUGCCGaCGgGGCC-CCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 123212 0.67 0.631956
Target:  5'- cGUACgugGCGGUgGCCgCCGGGuuccGCGCa -3'
miRNA:   3'- uCAUGa--UGCCGaCGG-GGCCCc---UGCGg -5'
29633 3' -60.8 NC_006151.1 + 117756 0.67 0.631956
Target:  5'- aGGUGCgaagcgcCGGCcgagguauagGCUCCGggcGGGGCGCCa -3'
miRNA:   3'- -UCAUGau-----GCCGa---------CGGGGC---CCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 95816 0.67 0.631956
Target:  5'- cGUGCcACGGCUcgacguacacGCacacgCCCGuGGGGCGCUc -3'
miRNA:   3'- uCAUGaUGCCGA----------CG-----GGGC-CCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 111650 0.67 0.622053
Target:  5'- uGUGCU-CGGCcgugaucgcgGCCagGGGGGCGUCg -3'
miRNA:   3'- uCAUGAuGCCGa---------CGGggCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 7659 0.67 0.622053
Target:  5'- --cGCU-CGGCgcgcGCUCCGaGGGCGCCc -3'
miRNA:   3'- ucaUGAuGCCGa---CGGGGCcCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 113075 0.67 0.622053
Target:  5'- cGUACgagcgcGCGGCcgucgccgccGCCaCCGGGGGCgggGCCg -3'
miRNA:   3'- uCAUGa-----UGCCGa---------CGG-GGCCCCUG---CGG- -5'
29633 3' -60.8 NC_006151.1 + 92659 0.67 0.612157
Target:  5'- aGGcGCU-CGcccuGCUGCCggcggCCGGGGACGCg -3'
miRNA:   3'- -UCaUGAuGC----CGACGG-----GGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 91129 0.67 0.612157
Target:  5'- --cACgGCGGCgagcuugGCCaCCuGGGGGCGCg -3'
miRNA:   3'- ucaUGaUGCCGa------CGG-GG-CCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 67873 0.67 0.612157
Target:  5'- aGGUGgcGCGcGCgccaGCCCgCGGGGcacaGCGCCa -3'
miRNA:   3'- -UCAUgaUGC-CGa---CGGG-GCCCC----UGCGG- -5'
29633 3' -60.8 NC_006151.1 + 36519 0.67 0.612157
Target:  5'- --gGCcgGCGGCgcgGCCUCGGaccccGGCGCCa -3'
miRNA:   3'- ucaUGa-UGCCGa--CGGGGCCc----CUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.