miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29633 3' -60.8 NC_006151.1 + 1999 0.66 0.681325
Target:  5'- gAGUc---CGGCcggGCCgaGGGGGCGCCc -3'
miRNA:   3'- -UCAugauGCCGa--CGGggCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 39953 0.66 0.681325
Target:  5'- uGGUGCUGaccccgGGCgccgucGCCgCCGcGGGCGCCc -3'
miRNA:   3'- -UCAUGAUg-----CCGa-----CGG-GGCcCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 56178 0.66 0.681325
Target:  5'- cGUGCUcucGCuGGCcgUGCCgCCGGuGGCGCUg -3'
miRNA:   3'- uCAUGA---UG-CCG--ACGG-GGCCcCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 65611 0.66 0.681325
Target:  5'- cGUACgaucCGGCcccgacgGCCaCGGGGuCGCCc -3'
miRNA:   3'- uCAUGau--GCCGa------CGGgGCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 135925 0.66 0.681325
Target:  5'- cGUGCgcGCGcuCUGCCgCGGGGA-GCCc -3'
miRNA:   3'- uCAUGa-UGCc-GACGGgGCCCCUgCGG- -5'
29633 3' -60.8 NC_006151.1 + 107538 0.66 0.681325
Target:  5'- --gGCccCGGCgGCCCCGccGGCGCCg -3'
miRNA:   3'- ucaUGauGCCGaCGGGGCccCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 134266 0.66 0.681325
Target:  5'- aGGUGCa--GGCgauuguaGCCCCGGGc-CGCCc -3'
miRNA:   3'- -UCAUGaugCCGa------CGGGGCCCcuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 136750 0.66 0.681325
Target:  5'- --aGCgucGCGcGCcucGCCCCGGccauGGGCGCCg -3'
miRNA:   3'- ucaUGa--UGC-CGa--CGGGGCC----CCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 87171 0.66 0.67838
Target:  5'- cGUACUacgcgcccGCGGCgccgccgcagcugcUGCcgCCCGGGGcCGUCg -3'
miRNA:   3'- uCAUGA--------UGCCG--------------ACG--GGGCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 89127 0.66 0.671496
Target:  5'- gAGg---GCGGCgGgaCCGGGGGCGUCg -3'
miRNA:   3'- -UCaugaUGCCGaCggGGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 98010 0.66 0.671496
Target:  5'- cGUAg-GCGGCgccggccagGUCCgCGGGGugGCg -3'
miRNA:   3'- uCAUgaUGCCGa--------CGGG-GCCCCugCGg -5'
29633 3' -60.8 NC_006151.1 + 21080 0.66 0.671496
Target:  5'- gGGUcaggGCGGCgaggaggaGCCCCGcGGGGaGCCg -3'
miRNA:   3'- -UCAuga-UGCCGa-------CGGGGC-CCCUgCGG- -5'
29633 3' -60.8 NC_006151.1 + 50714 0.66 0.671496
Target:  5'- --gGCgACGGCcGCCCCGGcGGuccaGCUg -3'
miRNA:   3'- ucaUGaUGCCGaCGGGGCC-CCug--CGG- -5'
29633 3' -60.8 NC_006151.1 + 39822 0.66 0.668541
Target:  5'- --cGCUGCGGCccgUcuucgucuccugcgGCCgCCGGGGccuCGCCg -3'
miRNA:   3'- ucaUGAUGCCG---A--------------CGG-GGCCCCu--GCGG- -5'
29633 3' -60.8 NC_006151.1 + 59203 0.67 0.661637
Target:  5'- aGGUuCUucACGcGCguggGCCCCGGGaACGUCu -3'
miRNA:   3'- -UCAuGA--UGC-CGa---CGGGGCCCcUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 102115 0.67 0.661637
Target:  5'- cGUGC-GCGGgccggagcCUGuuCCCCGGGcGCGCCg -3'
miRNA:   3'- uCAUGaUGCC--------GAC--GGGGCCCcUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 140437 0.67 0.661637
Target:  5'- gAGUACgugcccgGCGcCUGCCUCGGcgggaucauGGACGCg -3'
miRNA:   3'- -UCAUGa------UGCcGACGGGGCC---------CCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 78676 0.67 0.661637
Target:  5'- gGGUGCUggACgGGCUcuacGCCggCCGGGGccucguCGCCg -3'
miRNA:   3'- -UCAUGA--UG-CCGA----CGG--GGCCCCu-----GCGG- -5'
29633 3' -60.8 NC_006151.1 + 85155 0.67 0.661637
Target:  5'- cGUGCggcagGgGGCcgGCgCCGcGGGCGCCg -3'
miRNA:   3'- uCAUGa----UgCCGa-CGgGGCcCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 104542 0.67 0.651755
Target:  5'- gAGUACgagGCcgagcuGGCcGCCCUGGGcGCGCg -3'
miRNA:   3'- -UCAUGa--UG------CCGaCGGGGCCCcUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.