Results 21 - 40 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29633 | 3' | -60.8 | NC_006151.1 | + | 6153 | 0.66 | 0.720181 |
Target: 5'- gAGgACgGCGGCcucgGCCUCGGcGGCGUCg -3' miRNA: 3'- -UCaUGaUGCCGa---CGGGGCCcCUGCGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 89858 | 0.66 | 0.720181 |
Target: 5'- uGUGCgggACGGUcGCCUCGuaGACGCg -3' miRNA: 3'- uCAUGa--UGCCGaCGGGGCccCUGCGg -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 40525 | 0.66 | 0.720181 |
Target: 5'- aGGUgGCUGCGGCgGCggCGGaGGugGCg -3' miRNA: 3'- -UCA-UGAUGCCGaCGggGCC-CCugCGg -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 124143 | 0.66 | 0.719221 |
Target: 5'- uGGUGCgGCuggagcccgagcaGGcCUGCCCCGaguacucgcaGGGGCGCa -3' miRNA: 3'- -UCAUGaUG-------------CC-GACGGGGC----------CCCUGCGg -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 71086 | 0.66 | 0.710552 |
Target: 5'- --cACcACGGC-GCCgCGGgcgcGGGCGCCg -3' miRNA: 3'- ucaUGaUGCCGaCGGgGCC----CCUGCGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 67742 | 0.66 | 0.710552 |
Target: 5'- aGGcACggcGCGGCgGCCCCgucGGGGugcgGCGUCg -3' miRNA: 3'- -UCaUGa--UGCCGaCGGGG---CCCC----UGCGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 59841 | 0.66 | 0.710552 |
Target: 5'- --cGCcacCGGCcgGUCCgGGGGGCGCa -3' miRNA: 3'- ucaUGau-GCCGa-CGGGgCCCCUGCGg -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 54792 | 0.66 | 0.700861 |
Target: 5'- uGUACUACGa--GCCCCGGcaccGGCGCg -3' miRNA: 3'- uCAUGAUGCcgaCGGGGCCc---CUGCGg -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 74138 | 0.66 | 0.700861 |
Target: 5'- gGGUGCaGCGGgUG-CCgGGGGuCGUCc -3' miRNA: 3'- -UCAUGaUGCCgACgGGgCCCCuGCGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 129529 | 0.66 | 0.700861 |
Target: 5'- --cGCcgACGGgggGgCCCGGGGcCGCCg -3' miRNA: 3'- ucaUGa-UGCCga-CgGGGCCCCuGCGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 98216 | 0.66 | 0.700861 |
Target: 5'- gAGUGCgcgGCGGC-GCCCgCGcGcGGAC-CCu -3' miRNA: 3'- -UCAUGa--UGCCGaCGGG-GC-C-CCUGcGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 133285 | 0.66 | 0.707651 |
Target: 5'- --gGCgGCGGCccacgucgagguucuCCCCGGGGGCgGCCc -3' miRNA: 3'- ucaUGaUGCCGac-------------GGGGCCCCUG-CGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 15036 | 0.66 | 0.710552 |
Target: 5'- aGGUGCgcguccACGGCgcgcgggGCCCCGG---CGCCu -3' miRNA: 3'- -UCAUGa-----UGCCGa------CGGGGCCccuGCGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 57850 | 0.66 | 0.710552 |
Target: 5'- gGGUGCUccACGGCgcuggucgcgcGCCCCGccGGcaGACGUCg -3' miRNA: 3'- -UCAUGA--UGCCGa----------CGGGGC--CC--CUGCGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 123906 | 0.67 | 0.651755 |
Target: 5'- cGUGCggcGCGGCgGCCgugaCGcGGGcCGCCu -3' miRNA: 3'- uCAUGa--UGCCGaCGGg---GC-CCCuGCGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 59203 | 0.67 | 0.661637 |
Target: 5'- aGGUuCUucACGcGCguggGCCCCGGGaACGUCu -3' miRNA: 3'- -UCAuGA--UGC-CGa---CGGGGCCCcUGCGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 102115 | 0.67 | 0.661637 |
Target: 5'- cGUGC-GCGGgccggagcCUGuuCCCCGGGcGCGCCg -3' miRNA: 3'- uCAUGaUGCC--------GAC--GGGGCCCcUGCGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 140437 | 0.67 | 0.661637 |
Target: 5'- gAGUACgugcccgGCGcCUGCCUCGGcgggaucauGGACGCg -3' miRNA: 3'- -UCAUGa------UGCcGACGGGGCC---------CCUGCGg -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 78676 | 0.67 | 0.661637 |
Target: 5'- gGGUGCUggACgGGCUcuacGCCggCCGGGGccucguCGCCg -3' miRNA: 3'- -UCAUGA--UG-CCGA----CGG--GGCCCCu-----GCGG- -5' |
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29633 | 3' | -60.8 | NC_006151.1 | + | 104542 | 0.67 | 0.651755 |
Target: 5'- gAGUACgagGCcgagcuGGCcGCCCUGGGcGCGCg -3' miRNA: 3'- -UCAUGa--UG------CCGaCGGGGCCCcUGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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