miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29633 3' -60.8 NC_006151.1 + 13663 0.72 0.383183
Target:  5'- -----cGCGGCacccGCCuCCGGGGACGCg -3'
miRNA:   3'- ucaugaUGCCGa---CGG-GGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 13943 0.75 0.251516
Target:  5'- gGGgGCg--GGC-GCCCCGGGGACGCg -3'
miRNA:   3'- -UCaUGaugCCGaCGGGGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 15036 0.66 0.710552
Target:  5'- aGGUGCgcguccACGGCgcgcgggGCCCCGG---CGCCu -3'
miRNA:   3'- -UCAUGa-----UGCCGa------CGGGGCCccuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 17703 0.68 0.592414
Target:  5'- gAGgaagGCUGCuGUgUGCgCCCGGGuGCGCCg -3'
miRNA:   3'- -UCa---UGAUGcCG-ACG-GGGCCCcUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 19107 0.68 0.602276
Target:  5'- cGUAgUACaGCagGCaCCgCGGGGGCGCg -3'
miRNA:   3'- uCAUgAUGcCGa-CG-GG-GCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 19499 0.72 0.359619
Target:  5'- --cGCUcCGGg-GCCUCGGGGACGCa -3'
miRNA:   3'- ucaUGAuGCCgaCGGGGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 21080 0.66 0.671496
Target:  5'- gGGUcaggGCGGCgaggaggaGCCCCGcGGGGaGCCg -3'
miRNA:   3'- -UCAuga-UGCCGa-------CGGGGC-CCCUgCGG- -5'
29633 3' -60.8 NC_006151.1 + 21411 0.7 0.468719
Target:  5'- gGGcGgUGCGGCgucucggGCCUCGGGGGuCGCg -3'
miRNA:   3'- -UCaUgAUGCCGa------CGGGGCCCCU-GCGg -5'
29633 3' -60.8 NC_006151.1 + 21601 0.69 0.543637
Target:  5'- cGUACggcguggcgGCGGCguagGCCCgCGGGaGCGUCc -3'
miRNA:   3'- uCAUGa--------UGCCGa---CGGG-GCCCcUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 21774 0.71 0.429824
Target:  5'- cGGUGCUgguccacGCGGgcgaacgggcacucUUGCCCCucGGGGAgCGCCa -3'
miRNA:   3'- -UCAUGA-------UGCC--------------GACGGGG--CCCCU-GCGG- -5'
29633 3' -60.8 NC_006151.1 + 23245 0.66 0.691116
Target:  5'- --cGCccuCGGggGCCUCGGGGGCaucGCCg -3'
miRNA:   3'- ucaUGau-GCCgaCGGGGCCCCUG---CGG- -5'
29633 3' -60.8 NC_006151.1 + 25380 0.69 0.534028
Target:  5'- cGGUGacgGCGGCggugGUUCucgaccgcgaCGGGGGCGCCg -3'
miRNA:   3'- -UCAUga-UGCCGa---CGGG----------GCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 28262 0.71 0.416157
Target:  5'- gGGgcCUcacACGuggGCCCCGGGGACGCg -3'
miRNA:   3'- -UCauGA---UGCcgaCGGGGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 28305 0.66 0.691116
Target:  5'- --cAUUGgcCGGCgcguCCCCGGGG-CGCCc -3'
miRNA:   3'- ucaUGAU--GCCGac--GGGGCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 28832 0.74 0.282118
Target:  5'- ----aUGCGG--GCCCCGGGGACGCg -3'
miRNA:   3'- ucaugAUGCCgaCGGGGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 31733 0.67 0.651755
Target:  5'- cGUGgaGaGGCgcccGCgCCGGGGACGCg -3'
miRNA:   3'- uCAUgaUgCCGa---CGgGGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 36519 0.67 0.612157
Target:  5'- --gGCcgGCGGCgcgGCCUCGGaccccGGCGCCa -3'
miRNA:   3'- ucaUGa-UGCCGa--CGGGGCCc----CUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 37402 0.77 0.184663
Target:  5'- --cGCUACGGCgGCgCCGGGGACuCCc -3'
miRNA:   3'- ucaUGAUGCCGaCGgGGCCCCUGcGG- -5'
29633 3' -60.8 NC_006151.1 + 37695 0.7 0.468719
Target:  5'- cGUGaccccGCcGCUGCCgcacaUCGGGGACGCCa -3'
miRNA:   3'- uCAUga---UGcCGACGG-----GGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 38579 0.68 0.57278
Target:  5'- --cGCgcccGgGGCccgccGCCCCGGGGACGgCg -3'
miRNA:   3'- ucaUGa---UgCCGa----CGGGGCCCCUGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.