miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29633 3' -60.8 NC_006151.1 + 1999 0.66 0.681325
Target:  5'- gAGUc---CGGCcggGCCgaGGGGGCGCCc -3'
miRNA:   3'- -UCAugauGCCGa--CGGggCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 2408 0.7 0.468719
Target:  5'- cGGaGCU-CGGCgagGCCCCGGcGGcCGCa -3'
miRNA:   3'- -UCaUGAuGCCGa--CGGGGCC-CCuGCGg -5'
29633 3' -60.8 NC_006151.1 + 2681 0.73 0.337086
Target:  5'- aGGcGCaGCGGCUcgGCCCCGGGG-UGCa -3'
miRNA:   3'- -UCaUGaUGCCGA--CGGGGCCCCuGCGg -5'
29633 3' -60.8 NC_006151.1 + 3463 0.68 0.582581
Target:  5'- gGGUGCUcgGGCaugGgCCCGaGcGGGCGCCg -3'
miRNA:   3'- -UCAUGAugCCGa--CgGGGC-C-CCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 3680 0.71 0.399453
Target:  5'- cGGg---GCGGCggGCCCCGGGcGCGCg -3'
miRNA:   3'- -UCaugaUGCCGa-CGGGGCCCcUGCGg -5'
29633 3' -60.8 NC_006151.1 + 3827 0.7 0.468719
Target:  5'- uGGUGCUggcGgGGCUggaggGCCcggagCCGGGGAgGCCg -3'
miRNA:   3'- -UCAUGA---UgCCGA-----CGG-----GGCCCCUgCGG- -5'
29633 3' -60.8 NC_006151.1 + 4134 0.72 0.351992
Target:  5'- --cGCU-CGGCcgggccgGCCCCGGGGAuCGCg -3'
miRNA:   3'- ucaUGAuGCCGa------CGGGGCCCCU-GCGg -5'
29633 3' -60.8 NC_006151.1 + 5078 0.68 0.582581
Target:  5'- gAGgGCcGCGGg-GCCgCGGcGGGCGCCg -3'
miRNA:   3'- -UCaUGaUGCCgaCGGgGCC-CCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 5248 0.7 0.441996
Target:  5'- --gGCgGCGGCggggGCCCgGGGGGCGg- -3'
miRNA:   3'- ucaUGaUGCCGa---CGGGgCCCCUGCgg -5'
29633 3' -60.8 NC_006151.1 + 5373 0.7 0.486986
Target:  5'- --gGCgg-GGCUGUCUcugCGGGGGCGCCc -3'
miRNA:   3'- ucaUGaugCCGACGGG---GCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 5582 0.68 0.563019
Target:  5'- cGGUGCUggugAUGGUgacgaccgcgGUCCCcuccggcggaGGGGGCGCCg -3'
miRNA:   3'- -UCAUGA----UGCCGa---------CGGGG----------CCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 5713 0.71 0.424668
Target:  5'- --cGCUGCuGGCUGUgCUGGuGGCGCCg -3'
miRNA:   3'- ucaUGAUG-CCGACGgGGCCcCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 5846 0.72 0.359619
Target:  5'- gGGgagGCUGCGGagggggacgaGCgCCCGGGGcCGCCg -3'
miRNA:   3'- -UCa--UGAUGCCga--------CG-GGGCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 6153 0.66 0.720181
Target:  5'- gAGgACgGCGGCcucgGCCUCGGcGGCGUCg -3'
miRNA:   3'- -UCaUGaUGCCGa---CGGGGCCcCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 7659 0.67 0.622053
Target:  5'- --cGCU-CGGCgcgcGCUCCGaGGGCGCCc -3'
miRNA:   3'- ucaUGAuGCCGa---CGGGGCcCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 8186 0.67 0.641859
Target:  5'- -------gGGCcggGaCCCCGGGGGCGCUc -3'
miRNA:   3'- ucaugaugCCGa--C-GGGGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 9041 0.73 0.301858
Target:  5'- --cGCcGgGGCgccccgcgUGCUCCGGGGGCGCCg -3'
miRNA:   3'- ucaUGaUgCCG--------ACGGGGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 11150 0.68 0.553302
Target:  5'- --cGCUGCGGUUuCCCCuGGcGcGGCGCCu -3'
miRNA:   3'- ucaUGAUGCCGAcGGGG-CC-C-CUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 13177 0.71 0.424668
Target:  5'- cGGUcGCcGCGGCcGUCUCGGGGcccgcgGCGCCg -3'
miRNA:   3'- -UCA-UGaUGCCGaCGGGGCCCC------UGCGG- -5'
29633 3' -60.8 NC_006151.1 + 13382 0.72 0.383183
Target:  5'- -----cGCGGCacccGCCuCCGGGGACGCg -3'
miRNA:   3'- ucaugaUGCCGa---CGG-GGCCCCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.