miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29633 3' -60.8 NC_006151.1 + 141768 0.73 0.30867
Target:  5'- cGGUgGCgucgcCGGUucUGUCCCGGGGACGCg -3'
miRNA:   3'- -UCA-UGau---GCCG--ACGGGGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 141454 0.69 0.505584
Target:  5'- cGUAggAgGGCgGUCuggagCCGGGGGCGCCg -3'
miRNA:   3'- uCAUgaUgCCGaCGG-----GGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 140437 0.67 0.661637
Target:  5'- gAGUACgugcccgGCGcCUGCCUCGGcgggaucauGGACGCg -3'
miRNA:   3'- -UCAUGa------UGCcGACGGGGCC---------CCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 140389 0.71 0.406917
Target:  5'- --aGCUGCGuGCUGCCCgaggaccUGGGGGacuCGCCc -3'
miRNA:   3'- ucaUGAUGC-CGACGGG-------GCCCCU---GCGG- -5'
29633 3' -60.8 NC_006151.1 + 138615 0.72 0.36736
Target:  5'- --cGCU-CGGCgaggacGCCgCCGGGGGCGCg -3'
miRNA:   3'- ucaUGAuGCCGa-----CGG-GGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 137908 0.69 0.537864
Target:  5'- aGGUcgACggcgGCGGCUGCcacgggcgccugcucCCCuuuGGGGACGCg -3'
miRNA:   3'- -UCA--UGa---UGCCGACG---------------GGG---CCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 137390 0.71 0.433281
Target:  5'- uGUACaagaGCGcCUGCCCgccgGGGGGCGCCc -3'
miRNA:   3'- uCAUGa---UGCcGACGGGg---CCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 137092 0.72 0.351992
Target:  5'- cAGgcCUucGCGG-UGCUggCCGGGGACGCCu -3'
miRNA:   3'- -UCauGA--UGCCgACGG--GGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 136750 0.66 0.681325
Target:  5'- --aGCgucGCGcGCcucGCCCCGGccauGGGCGCCg -3'
miRNA:   3'- ucaUGa--UGC-CGa--CGGGGCC----CCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 136408 0.72 0.375216
Target:  5'- gAGcgGCUACGcGCgggGCCCCGcGGcGGCGCa -3'
miRNA:   3'- -UCa-UGAUGC-CGa--CGGGGC-CC-CUGCGg -5'
29633 3' -60.8 NC_006151.1 + 136205 0.69 0.543637
Target:  5'- uGGUACgugGCGcGCUucgGCCCCGaGGagaaGACGCUg -3'
miRNA:   3'- -UCAUGa--UGC-CGA---CGGGGC-CC----CUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 135925 0.66 0.681325
Target:  5'- cGUGCgcGCGcuCUGCCgCGGGGA-GCCc -3'
miRNA:   3'- uCAUGa-UGCc-GACGGgGCCCCUgCGG- -5'
29633 3' -60.8 NC_006151.1 + 134422 0.77 0.16749
Target:  5'- --aGCUGguGCUGCCCCccGGGGGCGCCg -3'
miRNA:   3'- ucaUGAUgcCGACGGGG--CCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 134266 0.66 0.681325
Target:  5'- aGGUGCa--GGCgauuguaGCCCCGGGc-CGCCc -3'
miRNA:   3'- -UCAUGaugCCGa------CGGGGCCCcuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 133285 0.66 0.707651
Target:  5'- --gGCgGCGGCccacgucgagguucuCCCCGGGGGCgGCCc -3'
miRNA:   3'- ucaUGaUGCCGac-------------GGGGCCCCUG-CGG- -5'
29633 3' -60.8 NC_006151.1 + 132851 0.71 0.407751
Target:  5'- --cACggGCGGCcGgCCCGGGGccGCGCCc -3'
miRNA:   3'- ucaUGa-UGCCGaCgGGGCCCC--UGCGG- -5'
29633 3' -60.8 NC_006151.1 + 130656 0.68 0.582581
Target:  5'- ---cCUGCGGCgugaacgucagUGCCCgCGGGG-CGCg -3'
miRNA:   3'- ucauGAUGCCG-----------ACGGG-GCCCCuGCGg -5'
29633 3' -60.8 NC_006151.1 + 129529 0.66 0.700861
Target:  5'- --cGCcgACGGgggGgCCCGGGGcCGCCg -3'
miRNA:   3'- ucaUGa-UGCCga-CgGGGCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 129323 0.67 0.651755
Target:  5'- --gGCagaGGCggguuagcgGCCCCGGGGcggccggcGCGCCg -3'
miRNA:   3'- ucaUGaugCCGa--------CGGGGCCCC--------UGCGG- -5'
29633 3' -60.8 NC_006151.1 + 129188 0.68 0.582581
Target:  5'- --cGCcACGGCcGCcgucagcaccucCCCGGGGGcCGCCa -3'
miRNA:   3'- ucaUGaUGCCGaCG------------GGGCCCCU-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.